DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment yl and ImpE1

DIOPT Version :9

Sequence 1:NP_996433.1 Gene:yl / 32367 FlyBaseID:FBgn0004649 Length:1984 Species:Drosophila melanogaster
Sequence 2:NP_001261577.1 Gene:ImpE1 / 45879 FlyBaseID:FBgn0001253 Length:1616 Species:Drosophila melanogaster


Alignment Length:697 Identity:150/697 - (21%)
Similarity:248/697 - (35%) Gaps:179/697 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   635 KDHRILAKDRTIYAVHIYHPAKQPNSPHGCENATCSHLCLLAEPEIGGHSCACPDGMRLAPDHRR 699
            :||::...:....:|.......:|      |..|.:   :.||......|...|:    |||...
  Fly   974 EDHKLTKPEMDYTSVEHLQELSRP------EETTAA---IEAEESDSRESTLAPE----APDAPI 1025

  Fly   700 CMLMEKRQRLFIGLGQVLLEIEHTAFGRHQVSKSYTLPCLINEMVYNRINGSLIIADNDQRLILE 764
            .::.|:|            :.||.....|:           :|.:.:.::..::.||:....: .
  Fly  1026 AIVSEER------------DPEHDPQNFHE-----------SESIADILSDLMLEADSTVPPV-P 1066

  Fly   765 FQPESHESNVLVRSNLGNVSALAFDHLSRNLYWAD-TERAVIEVLSLQTRHRALIRFF-----PG 823
            |..:..::..:|.:|..|....|.:.:|.....|| |:....:|..:.....|:...|     ..
  Fly  1067 FGQQPAQTVPMVEANSENEEEQAHEAISDLQAEADETQEHAEQVQPVNEPGTAIPELFAEAAKDE 1131

  Fly   824 QEVPI------GLTVMPAEGYLYVVLKAKRH--SHIDKIPLSGKGEQVHVF---------EDDLG 871
            ::||.      ..|..|:      .|:.::|  |..::.|:    |..|.:         |:...
  Fly  1132 EDVPALPESDESKTEQPS------ALEVEQHIASEAEQTPV----EDEHQYDEEEHQQDQEEHQQ 1186

  Fly   872 DDDIKLVTDYETQTIFWSDSDLGRISYSNYRVPHSQIFRGKL--RRPYSLAMVHHDL-FWNELGT 933
            |:|..| .:.||:::      ....:...::.|..:.....|  ..|:.|. .|.|: .:|||.:
  Fly  1187 DEDEPL-KEVETESL------PEEATTEKFQEPEPEEVNTPLPEELPFDLT-DHSDVNRFNELQS 1243

  Fly   934 PRIYWTHKSNMGPRKVID--IMEKDDPAA--------------------------------IMPY 964
            ..:.....:|:...:.:|  .:|:::|||                                :.|.
  Fly  1244 ESLILESTTNIDGLQELDNNHIEEEEPAAHAIPHEEATPNPADIVEITTQTMLGLASRVTLMEPA 1308

  Fly   965 VPVATPNGIPLAASSPVGQESHPCQQQNGGCSHICVGEGPYHSICLCPAGFVYR---DAGNRTCV 1026
            .||.|.....:.|..|..:...|...             |..|:.....|...|   |.|    :
  Fly  1309 APVVTTLMPLMTADEPTPEPVSPAAI-------------PSASLAAIKPGTELRKRVDLG----L 1356

  Fly  1027 EALDCEFRCHSG-EC-LTMNHR-CNGRR--DCVDNSDEMNCDEEHRRKPKVLCSPNQFACHSGEQ 1086
            ||:.....|.|. :| |...|. ||.|.  ||....:...|..|     :..|||..|.|.|...
  Fly  1357 EAVSLGLACSSDRQCQLADPHTVCNRRGVCDCAAGEEGSQCSAE-----RTGCSPGTFQCRSSGV 1416

  Fly  1087 CVDKERRCDNRKDCHDHSDEQHCEKFDKSKKCHVHQHGCD-NGKCVDSSLVCDGTNDCGDNSDEL 1150
            |:.....||.|.||:|.|||:.......::.|......|. :|:|:..:.:|||...|....|||
  Fly  1417 CISWFFVCDGRADCNDASDEECTHNARLNQTCPTESFRCQRSGRCISRAALCDGRRQCPHGEDEL 1481

  Fly  1151 LCEAT----SRCEPGMFQCGSGSCIAGSWECDGRIDCSDGSDEHDK-CVHRS------------- 1197
            .|:.:    :.|....|:||||.|:.....|:..:.|.|||||... |..|:             
  Fly  1482 GCDGSVKGGNACPEHTFRCGSGECLPEYEYCNAIVSCKDGSDEPPHLCGSRALPNLFMRLIEAGG 1546

  Fly  1198 ------------CPPDMQRCLLGQCLDRSLVCDGHNDCGDKSDELNC 1232
                        ||   .||..|.|...::||.|.:.|||.:||..|
  Fly  1547 LLGGGRREADAYCP---HRCSNGLCRSTAIVCSGRDGCGDGTDEQTC 1590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ylNP_996433.1 LDLa 90..124 CDD:238060
LDLa 131..166 CDD:238060
LDLa 184..216 CDD:238060
LDLa 227..262 CDD:238060
LDLa 271..302 CDD:238060
FXa_inhibition 352..387 CDD:291342
Ldl_recept_b 442..482 CDD:278487
LY 466..508 CDD:214531
Ldl_recept_b 529..569 CDD:278487
LY 553..595 CDD:214531
LY 596..637 CDD:214531 0/1 (0%)
FXa_inhibition 669..700 CDD:291342 7/30 (23%)
LY 774..815 CDD:214531 9/41 (22%)
LDLa 1032..1062 CDD:238060 10/34 (29%)
LDLa 1074..1109 CDD:238060 16/34 (47%)
LDLa 1118..1152 CDD:238060 11/34 (32%)
LDLa 1157..1189 CDD:197566 12/31 (39%)
LDLa 1198..1232 CDD:238060 14/33 (42%)
LDLa 1243..1279 CDD:238060
LDLa 1283..1318 CDD:238060
LDLa 1340..1371 CDD:197566
FXa_inhibition 1388..1416 CDD:291342
EGF_CA 1418..1452 CDD:214542
ImpE1NP_001261577.1 EB 75..131 CDD:279949
LDLa 1404..1437 CDD:238060 15/32 (47%)
LDLa 1448..1483 CDD:238060 11/34 (32%)
LDLa 1493..1524 CDD:238060 12/30 (40%)
LDLa 1561..1590 CDD:238060 12/28 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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