Sequence 1: | NP_996433.1 | Gene: | yl / 32367 | FlyBaseID: | FBgn0004649 | Length: | 1984 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_000518.1 | Gene: | LDLR / 3949 | HGNCID: | 6547 | Length: | 860 | Species: | Homo sapiens |
Alignment Length: | 932 | Identity: | 274/932 - (29%) |
---|---|---|---|
Similarity: | 432/932 - (46%) | Gaps: | 206/932 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 66 ISLLLLVGLCGGTAAGTPGSADTRCDAGQFQCRDGGCILQAKMCDGRGDCKDSSDE--------- 121
Fly 122 -----LDCDYRL--CRPPHW-------------------FPCAQPH-----GACLAAELMCNGID 155
Fly 156 NCPGGEDELNCPV---------------------------------------RPGFRF-GDTAHR 180
Fly 181 MRSCSKYEFMCQQDRTCIPIDFMCDGRPDCTDKSDEVAGCKQAEITCPGEGHLCANGRCLRRKQW 245
Fly 246 VCDGVDDCGDGSDERGCLN--LCEPQKGKFLCRNRETCLTLSEVCDGHSDCSDGSDETDLCHSKP 308
Fly 309 --DCDAKKCA--LGAKCHMMP--ASGAECFCPKGFRLAKFEDKCEDVDECKEQDDLCSQGCENTS 367
Fly 368 GGYRCVCDAGYLLDKDNRTCRAVVYGSKEQQPLLLYTTQMTIMGMHLREDNVRNHVYQVAGNLSK 432
Fly 433 VIGVAYD--GSHIYWTNIQNE---AESIVKANGDGSNAEILLTSGLDAPEDLAVDWLTQNIYFSD 492
Fly 493 NIMRHIAVCSNDGLNCAVLVTQDVHQPRSLAVWPQKGLMFWTDWGEKPMIGRASMDGSRSRPIVS 557
Fly 558 DNIEWPNGIALDMHQQRIYWVDAKLGSVQTVRPDGTGRRTVLDG--MLKHPYGLAIFEDQLYWSD 620
Fly 621 WATKSVHACHKFSGKDHRILAKD-RTIYAVHIYHPAKQPNSPHGCENAT-----CSHLCLLAEPE 679
Fly 680 IGGHS----CACPDGMRLAPDHRRCMLMEKRQRLFIGLGQVLLEIEHTAFGRHQVSKSYTLPCLI 740
Fly 741 NEMVYNRINGSLIIADNDQRLILEFQPESHESNVLVRSNLGNVSALAFDHLSRNLYWADTERAVI 805
Fly 806 EVLSLQTRHRALIRFFPGQEVPIGLTVMPAEGYLYVVLKAKRHSHIDKI----PLSGK--GEQVH 864
Fly 865 VFEDDLG-----------DDDI 875 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
yl | NP_996433.1 | LDLa | 90..124 | CDD:238060 | 16/47 (34%) |
LDLa | 131..166 | CDD:238060 | 11/58 (19%) | ||
LDLa | 184..216 | CDD:238060 | 16/31 (52%) | ||
LDLa | 227..262 | CDD:238060 | 12/34 (35%) | ||
LDLa | 271..302 | CDD:238060 | 15/30 (50%) | ||
FXa_inhibition | 352..387 | CDD:291342 | 15/34 (44%) | ||
Ldl_recept_b | 442..482 | CDD:278487 | 10/42 (24%) | ||
LY | 466..508 | CDD:214531 | 13/41 (32%) | ||
Ldl_recept_b | 529..569 | CDD:278487 | 17/39 (44%) | ||
LY | 553..595 | CDD:214531 | 19/41 (46%) | ||
LY | 596..637 | CDD:214531 | 13/42 (31%) | ||
FXa_inhibition | 669..700 | CDD:291342 | 20/34 (59%) | ||
LY | 774..815 | CDD:214531 | 5/40 (13%) | ||
LDLa | 1032..1062 | CDD:238060 | |||
LDLa | 1074..1109 | CDD:238060 | |||
LDLa | 1118..1152 | CDD:238060 | |||
LDLa | 1157..1189 | CDD:197566 | |||
LDLa | 1198..1232 | CDD:238060 | |||
LDLa | 1243..1279 | CDD:238060 | |||
LDLa | 1283..1318 | CDD:238060 | |||
LDLa | 1340..1371 | CDD:197566 | |||
FXa_inhibition | 1388..1416 | CDD:291342 | |||
EGF_CA | 1418..1452 | CDD:214542 | |||
LDLR | NP_000518.1 | Ldl_recept_a | 25..58 | CDD:278486 | 15/32 (47%) |
Ldl_recept_a | 66..104 | CDD:278486 | 5/37 (14%) | ||
Ldl_recept_a | 107..143 | CDD:278486 | 9/35 (26%) | ||
Ldl_recept_a | 147..179 | CDD:278486 | 0/31 (0%) | ||
Ldl_recept_a | 195..231 | CDD:278486 | 18/41 (44%) | ||
Ldl_recept_a | 235..270 | CDD:278486 | 13/35 (37%) | ||
LDLa | 278..308 | CDD:294076 | 13/30 (43%) | ||
FXa_inhibition | 318..>346 | CDD:291342 | 10/27 (37%) | ||
EGF_CA | 354..388 | CDD:214542 | 18/34 (53%) | ||
LDL-receptor class B 1 | 397..438 | 9/47 (19%) | |||
LY | 419..457 | CDD:214531 | 6/37 (16%) | ||
LDL-receptor class B 2 | 439..485 | 13/46 (28%) | |||
Ldl_recept_b | 439..482 | CDD:278487 | 10/43 (23%) | ||
LDL-receptor class B 3 | 486..528 | 11/41 (27%) | |||
Ldl_recept_b | 487..525 | CDD:278487 | 9/37 (24%) | ||
LDL-receptor class B 4 | 529..572 | 19/42 (45%) | |||
Ldl_recept_b | 529..569 | CDD:278487 | 17/39 (44%) | ||
LY | 553..595 | CDD:214531 | 19/41 (46%) | ||
LDL-receptor class B 5 | 573..615 | 17/41 (41%) | |||
LDL-receptor class B 6 | 616..658 | 8/41 (20%) | |||
Ldl_recept_b | 616..655 | CDD:278487 | 7/38 (18%) | ||
FXa_inhibition | 671..711 | CDD:291342 | 21/40 (53%) | ||
Clustered O-linked oligosaccharides | 721..768 | 10/58 (17%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 734..755 | 6/27 (22%) | |||
Required for MYLIP-triggered down-regulation of LDLR. /evidence=ECO:0000269|PubMed:19520913 | 811..860 | 11/49 (22%) | |||
NPXY motif. /evidence=ECO:0000269|PubMed:22509010 | 823..828 | 1/4 (25%) | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG1215 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0002088 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |