DRSC/TRiP Functional Genomics Resources

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Protein Alignment yl and Lrp10

DIOPT Version :10

Sequence 1:NP_996433.1 Gene:yl / 32367 FlyBaseID:FBgn0004649 Length:1984 Species:Drosophila melanogaster
Sequence 2:NP_001382489.1 Gene:Lrp10 / 305880 RGDID:1310471 Length:712 Species:Rattus norvegicus


Alignment Length:479 Identity:109/479 - (22%)
Similarity:145/479 - (30%) Gaps:189/479 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   967 VATPNGIPLAASS-----------------PVGQESHPCQQQNGGCSHICVGE------------ 1002
            :|.|:.||...|:                 |:|::|   :.....|:.:.:|.            
  Rat    17 LARPDRIPFLNSACEAPPAVLLEVQGTLQRPLGRDS---RSSPANCTWVILGSKEQTVTVRFQKL 78

  Fly  1003 ----GPYH-----------SICLCPAGFVYRDAGNRT--------------------------CV 1026
                |..|           |:|..|||.:....||.|                          |:
  Rat    79 HLACGSEHLILHSPLQPPVSLCEAPAGPLQLPGGNVTITYSYAGARAPMGQGFLLTYSQDWLLCL 143

  Fly  1027 EALDCEFRCHSGECLTMNHRCNGRRDCVDNSDEMNCDEEHRRKP----------------KVLCS 1075
            :.   ||:|.:..|:....||:|...|.|.|||..|..:....|                .|..|
  Rat   144 QE---EFQCLNHRCIPAAQRCDGIDACGDGSDEAGCRSDPFPNPVPAPTPPCNLTLEDFYGVFSS 205

  Fly  1076 PNQFACHSGEQCVDKERRCDNRKDCHD--------------HSDEQH----------------CE 1110
            |.    :|....|...:.|....|.||              :.|..|                ..
  Rat   206 PG----YSHLASVSHPQSCLWLLDPHDGRRLAVRFTALDLSYGDAVHVYDGAGPPETPRLLRSLT 266

  Fly  1111 KFDKSKKCHVHQHGCDNGKCVDSSLVCDGTNDCGDNSDELLCEATSRCEPGMFQCGSGS------ 1169
            .|...|...|...   :|:.|.|......:|..|.|:   .......|.|....||.||      
  Rat   267 HFSNGKAVTVETL---SGQAVVSYHTVAWSNGRGFNA---TYHVRGYCLPWDRPCGLGSGLGASE 325

  Fly  1170 -----CIAGSWECDGRIDCSDGSDEHDKCVHRSCPPDMQRCLLGQCLDRSLVCDGHNDCGDKSDE 1229
                 |.:.:..|||..||:||:|| :.|  ..|||                  ||..||     
  Rat   326 NLGERCYSEAQRCDGSWDCADGTDE-EGC--PGCPP------------------GHYPCG----- 364

  Fly  1230 LNCGTDSSTMNISCAEDQYQCTSNLKICLPSTVRCNGTTECPRGEDEADCGDVCSIYEFKCRSGR 1294
             ..||..:|                 .|.....|||..|.|..|.||..|.. |....|:||. .
  Rat   365 -AAGTPGAT-----------------ACYLPADRCNYQTFCADGADERRCRH-CQPGNFRCRD-E 409

  Fly  1295 ECIRREFRCDGQKDCGDGSDELSC 1318
            :|:...:.||||.||.|||||..|
  Rat   410 KCVYETWVCDGQPDCTDGSDEWDC 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ylNP_996433.1 LDLa 90..124 CDD:238060
LDLa 131..166 CDD:238060
LDLa 184..216 CDD:238060
LDLa 227..262 CDD:238060
LDLa 271..302 CDD:238060
FXa_inhibition 352..387 CDD:464251
Ldl_recept_b 442..483 CDD:459654
LY 466..508 CDD:214531
Ldl_recept_b 529..569 CDD:459654
LY 553..595 CDD:214531
LY 596..637 CDD:214531
FXa_inhibition 669..700 CDD:464251
LY 774..815 CDD:214531
LDLa 1032..1062 CDD:238060 12/29 (41%)
LDLa 1074..1109 CDD:238060 10/64 (16%)
LDLa 1118..1152 CDD:238060 7/33 (21%)
LDLa 1157..1189 CDD:197566 14/42 (33%)
LDLa 1198..1232 CDD:238060 7/33 (21%)
LDLa 1243..1279 CDD:238060 9/35 (26%)
LDLa 1283..1318 CDD:238060 16/34 (47%)
LDLa 1340..1371 CDD:197566
FXa_inhibition 1388..1416 CDD:464251
EGF_CA 1418..1452 CDD:214542
Lrp10NP_001382489.1 CUB 36..136 CDD:412131 15/102 (15%)
LDLa 142..176 CDD:238060 13/36 (36%)
CUB 192..302 CDD:238001 20/119 (17%)
LDLa <330..353 CDD:238060 10/23 (43%)
LDLa 399..433 CDD:238060 16/34 (47%)
Blue background indicates that the domain is not in the aligned region.

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