DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment yl and egg-2

DIOPT Version :9

Sequence 1:NP_996433.1 Gene:yl / 32367 FlyBaseID:FBgn0004649 Length:1984 Species:Drosophila melanogaster
Sequence 2:NP_498537.1 Gene:egg-2 / 187510 WormBaseID:WBGene00019811 Length:548 Species:Caenorhabditis elegans


Alignment Length:499 Identity:146/499 - (29%)
Similarity:205/499 - (41%) Gaps:120/499 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1004 PYHSICLCPAGFVYRDAGNRTCVEALDCEFRCHSGECLTMNHRCNGRRDCVDNSDEMNC------ 1062
            |..|.|   :||.:      .|..::|.        .:..:.||:|.:||.|.|||.||      
 Worm   118 PNVSTC---SGFGF------ACTGSIDM--------IIPSSKRCDGLKDCSDGSDEENCKECQSI 165

  Fly  1063 -------DEEHRRKPKVLCSPNQFACHSGEQCVDKERRCDNRKDCHDHSDEQHCEKFDKSKKCHV 1120
                   :||..:|.|....|...       |:..|:.|:..::|.|.|||..|.     .||..
 Worm   166 YSCRAHIEEESEKKDKTSVLPTLI-------CLTAEKLCNGVENCPDGSDEASCR-----SKCSK 218

  Fly  1121 HQHGCD-NGKCVDSSLVCDGTNDCGDNSDELLCEATSRCEPGMFQCGSGSCIAGSWECDGRIDCS 1184
            .|..|. :..|:..|:.|||.:||.:.|||..|   ::|:.|..:||. :||..|..|||..||.
 Worm   219 DQFKCSGSDACLPISVKCDGVSDCENESDESNC---NKCQKGAHKCGK-NCIKASKVCDGIPDCD 279

  Fly  1185 DGSDEHDKCVHRSCP-PDMQRCLLGQCLDRSLVCDGHNDCGDKSDELNCGTDSSTMNISCAEDQY 1248
            |||||| :|..::|. .:...|..|.|:.||.||||.:||.|..||.||..       ||:.:::
 Worm   280 DGSDEH-QCDCKTCSGSEKALCEDGTCIMRSQVCDGKHDCLDGIDEENCPG-------SCSNERF 336

  Fly  1249 QCTSNLKIC-----LPSTVRCNGTTE-----CPRGEDEADCGDVCSIYEFKCRS----GRECIRR 1299
            .....|..|     ......|:|..|     ||:.:.:         :.|.|.:    ..:||:|
 Worm   337 SSKLKLLTCDDGNQYSEVEACSGLVEACELNCPKCDPK---------HTFTCPAVGGIHNKCIKR 392

  Fly  1300 EFRCDGQKDCGDGSDELSCELEKGHHNQSQIQPWSTSSRSCRPHLFDCQDGECVDLSRVCNNFPD 1364
            ...|||..||.||:||..|...|....:|.||             |.| |.:|::.||.|:...|
 Worm   393 SKVCDGIFDCEDGADEKKCTPVKECVVESSIQ-------------FTC-DNKCLESSRRCDGVWD 443

  Fly  1365 CTNGHDEGPKCATACRSASGRQVCQHKCRA--TPAGAVCSCFDGYRLDADQKSCL---------D 1418
            |.:..||  |....|.|.|.:.....||..  |....|..|.||    :|:..|.         |
 Worm   444 CEDKSDE--KGCDKCPSRSFKCSADKKCLPFHTRCNGVAECSDG----SDEHKCSCQECLGTHHD 502

  Fly  1419 IDECQEQQPC---AQLCENTLGGYQCQCHADFMLRQDRVSCKSL 1459
            ...|.|...|   .::|    ..|....:|.::   |:..|.||
 Worm   503 TYMCSESNRCLKRGEVC----SPYSMCPNATYI---DKAYCASL 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ylNP_996433.1 LDLa 90..124 CDD:238060
LDLa 131..166 CDD:238060
LDLa 184..216 CDD:238060
LDLa 227..262 CDD:238060
LDLa 271..302 CDD:238060
FXa_inhibition 352..387 CDD:291342
Ldl_recept_b 442..482 CDD:278487
LY 466..508 CDD:214531
Ldl_recept_b 529..569 CDD:278487
LY 553..595 CDD:214531
LY 596..637 CDD:214531
FXa_inhibition 669..700 CDD:291342
LY 774..815 CDD:214531
LDLa 1032..1062 CDD:238060 9/29 (31%)
LDLa 1074..1109 CDD:238060 9/34 (26%)
LDLa 1118..1152 CDD:238060 13/34 (38%)
LDLa 1157..1189 CDD:197566 15/31 (48%)
LDLa 1198..1232 CDD:238060 15/34 (44%)
LDLa 1243..1279 CDD:238060 8/45 (18%)
LDLa 1283..1318 CDD:238060 14/38 (37%)
LDLa 1340..1371 CDD:197566 9/30 (30%)
FXa_inhibition 1388..1416 CDD:291342 8/29 (28%)
EGF_CA 1418..1452 CDD:214542 7/36 (19%)
egg-2NP_498537.1 LDLa 123..159 CDD:238060 14/52 (27%)
LDLa 216..251 CDD:238060 13/34 (38%)
LDLa 254..287 CDD:238060 18/34 (53%)
LDLa 300..327 CDD:238060 14/26 (54%)
LDLa 424..453 CDD:238060 13/44 (30%)
LDLa 456..491 CDD:238060 11/38 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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