DRSC/TRiP Functional Genomics Resources

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Protein Alignment yl and lrpc-1

DIOPT Version :10

Sequence 1:NP_996433.1 Gene:yl / 32367 FlyBaseID:FBgn0004649 Length:1984 Species:Drosophila melanogaster
Sequence 2:NP_001343649.1 Gene:lrpc-1 / 187424 WormBaseID:WBGene00019756 Length:542 Species:Caenorhabditis elegans


Alignment Length:330 Identity:88/330 - (26%)
Similarity:121/330 - (36%) Gaps:120/330 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1127 NGKCVDSSLVCDG---TNDCGDNSDELLCEA--------------------------------TS 1156
            :|..::..:|.:|   .|.|  ||.:||.||                                ..
 Worm    20 SGNGIEQLMVAEGPIPQNFC--NSSDLLEEAGLIKSTLGQFLGYECSEEFYHCRWQSDGFRTYRK 82

  Fly  1157 RCEPGMFQCGSGSCIAGSWECD-------------GRIDCSDGSDEHDKCVHRSCPPDMQRCLLG 1208
            :|:||:..     .:.|:..|:             |.:.| :|:|.|       ||      |..
 Worm    83 KCKPGLVY-----DVLGTQNCNYDYNVKSCGVRSGGPVQC-NGTDFH-------CP------LSE 128

  Fly  1209 QCLDRSLVCDGHNDCGDKSDELNCGTDSSTMNISCAEDQYQCTSNLKICLPSTVRCNGTTECPRG 1273
            ||:..|..||||.||..:.||.||..        |...::.|..: :.|:....||||..||..|
 Worm   129 QCVPMSSRCDGHYDCSMEEDEQNCPL--------CTAGEFACKVS-EQCISLDRRCNGLIECDDG 184

  Fly  1274 EDEADCGDVCSIYEFKCRSGRECIRREFRCDGQKDCGDGSDELSC---ELEKGHHNQSQIQPWST 1335
            .||.|| |||....|.|....|||..:.||||::.|..|.||:.|   |.||             
 Worm   185 TDERDC-DVCGHGLFHCGKSNECIPMDERCDGRRQCPHGEDEMLCKKPETEK------------- 235

  Fly  1336 SSRSCRPHLFDCQDGEC-VDLSRVCNNFPDCTNGHDE-------GPKCATACRSASGRQVCQHKC 1392
                    .|.||..:. :..::||:..|.|.:|.||       .||...|...:|         
 Worm   236 --------KFTCQSRDYEIPTNQVCDGMPQCPDGSDEAYCEYPGSPKSQAAISFSS--------- 283

  Fly  1393 RATPA 1397
            ..|||
 Worm   284 NLTPA 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ylNP_996433.1 LDLa 90..124 CDD:238060
LDLa 131..166 CDD:238060
LDLa 184..216 CDD:238060
LDLa 227..262 CDD:238060
LDLa 271..302 CDD:238060
FXa_inhibition 352..387 CDD:464251
Ldl_recept_b 442..483 CDD:459654
LY 466..508 CDD:214531
Ldl_recept_b 529..569 CDD:459654
LY 553..595 CDD:214531
LY 596..637 CDD:214531
FXa_inhibition 669..700 CDD:464251
LY 774..815 CDD:214531
LDLa 1032..1062 CDD:238060
LDLa 1074..1109 CDD:238060
LDLa 1118..1152 CDD:238060 8/27 (30%)
LDLa 1157..1189 CDD:197566 8/44 (18%)
LDLa 1198..1232 CDD:238060 14/33 (42%)
LDLa 1243..1279 CDD:238060 12/35 (34%)
LDLa 1283..1318 CDD:238060 14/34 (41%)
LDLa 1340..1371 CDD:197566 8/31 (26%)
FXa_inhibition 1388..1416 CDD:464251 3/10 (30%)
EGF_CA 1418..1452 CDD:214542
lrpc-1NP_001343649.1 LDLa 117..152 CDD:238060 18/48 (38%)
LDLa 155..190 CDD:238060 12/35 (34%)
LDLa 193..228 CDD:238060 14/34 (41%)
LDLa 233..267 CDD:238060 12/54 (22%)
PHA03247 <353..496 CDD:223021
Blue background indicates that the domain is not in the aligned region.

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