DRSC/TRiP Functional Genomics Resources

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Protein Alignment yl and rme-2

DIOPT Version :10

Sequence 1:NP_996433.1 Gene:yl / 32367 FlyBaseID:FBgn0004649 Length:1984 Species:Drosophila melanogaster
Sequence 2:NP_500815.2 Gene:rme-2 / 177329 WormBaseID:WBGene00004374 Length:925 Species:Caenorhabditis elegans


Alignment Length:701 Identity:186/701 - (26%)
Similarity:278/701 - (39%) Gaps:159/701 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 CDAGQFQCRDGGCILQAKMCDGRGDCKDSSDELDCDYRL-----------------------CRP 131
            |......|::|.|:.....|||..||:|.|||..|:|.:                       |.|
 Worm    75 CSTSFMLCKNGLCVANEFKCDGEDDCRDGSDEQHCEYNILKSRFDGSNPSAPTTFVGHNGPECHP 139

  Fly   132 PHWFPCAQPHGACLAAELMCNGIDNCPGGEDELNCPVRPGFR-------FGDTAHRM-------- 181
            |. ..|..  |.|:..:|:|:|..:|.||:||:|| .|.|..       |.|..|.:        
 Worm   140 PR-LRCRS--GQCIQPDLVCDGHTDCSGGDDEVNC-TRRGHENMQSSTDFHDDVHLVDPTFFANE 200

  Fly   182 -RSCSKYEFMCQQDRTCIPIDFMCDGRPDCTDKSDEVAGCKQAEITCPGEG----------HLCA 235
             ..|.....||.....|||..|:|||..||.|.|||    |..:...|.|.          |.|:
 Worm   201 DNKCRSGYTMCHSGDVCIPDSFLCDGDLDCDDASDE----KNCQTNAPSEEEYLSGQADHMHSCS 261

  Fly   236 NGRCLRRKQWVCDGVDDCGDGSDERGCLNLCEPQKGKFLCRNRETCLTLSEVCDGHSDCSDGSDE 300
                       ..|:..||....|.|                  .|:.::..|:|..:|..|.||
 Worm   262 -----------AAGMYSCGTKGSEIG------------------VCIPMNATCNGIKECPLGDDE 297

  Fly   301 TDLCHSKPDCDAKKCALGAKCHMMPASGAECFCPKGFRLAKFEDKCEDVDECKEQDDLCSQGCEN 365
            :..|   .:|..|:|  ...|...| .||.|.|.:|::||.....|||.|||.....||...||:
 Worm   298 SKHC---SECARKRC--DHTCMNTP-HGARCICQEGYKLADDGLTCEDEDECATHGHLCQHFCED 356

  Fly   366 TSGGYRCVCDAGYLLDKDNRTCR------------AVVYGSKEQQPLLLYTTQMTIMGMHLREDN 418
            ..|.:.|.|..||.|:.|..:|:            ..:.|...|.||..:|.             
 Worm   357 RLGSFACKCANGYELETDGHSCKYETTTTPEGYLFISLGGEVRQMPLADFTD------------- 408

  Fly   419 VRNHVYQVAGNLSKVIGVAYDGS--HIYWTNIQNEA-ESIVKANGDGSNAEILLTSGL------- 473
                    ..|.|.:...|..|:  .|.:.:..|:. .||...:||.:....:..:||       
 Worm   409 --------GSNYSPIQKFAGHGTIRSIDFMHRNNKMFMSISDEHGDPTGELSVSDNGLMRVLREN 465

  Fly   474 -DAPEDLAVDWLTQNIYF---SDNIMRHIAVCSNDGLNCAVLV--TQDVHQPRSLAVWPQKGLMF 532
             ....::||||:..|::|   |.:....|::|:..|:.|..::  .:.....|.|.|.|.:||:.
 Worm   466 VIGVSNVAVDWIGGNVFFTQKSPSPSAGISICTMSGMFCRRVIEGKEQGQSYRGLVVHPMRGLII 530

  Fly   533 WTDWGEK-PMIGRASMDGSRSRPIVSDNIEWPNGIALDMHQQRIYWVDAKLGSVQTVRPDGTGRR 596
            |.|..:| ..|..|:||||:.|.::.:.:|.|:.:|:|..:..:|:.|.:...::.|..|...||
 Worm   531 WIDSYQKYHRIMMANMDGSQVRILLDNKLEVPSALAIDYIRHDVYFGDVERQLIERVNIDTKERR 595

  Fly   597 TVLDGMLKHPYGLAIFEDQLYWSDWATKSVHACHKFSGKDHR------ILAKDRTIYAVHIYHPA 655
            .|:...:.|||.:|.|...|||:||.::|:    |.....|.      |...:|..|.:.:.|..
 Worm   596 VVISNGVHHPYDMAYFNGFLYWADWGSESL----KVQEMTHHHSSPQVIHTFNRYPYGIAVNHSL 656

  Fly   656 KQ---PNSPHGCENATCSHLCLLAEPE--IGGHSCACPDGMRLAPDHRRCM 701
            .|   |::|  |....|..||::....  |....|.||||...:.....|:
 Worm   657 YQTGPPSNP--CLELECPWLCVIVPKSDFIMTAKCVCPDGYTHSVTENSCI 705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ylNP_996433.1 LDLa 90..124 CDD:238060 13/33 (39%)
LDLa 131..166 CDD:238060 13/34 (38%)
LDLa 184..216 CDD:238060 14/31 (45%)
LDLa 227..262 CDD:238060 8/44 (18%)
LDLa 271..302 CDD:238060 7/30 (23%)
FXa_inhibition 352..387 CDD:464251 12/34 (35%)
Ldl_recept_b 442..483 CDD:459654 10/49 (20%)
LY 466..508 CDD:214531 12/52 (23%)
Ldl_recept_b 529..569 CDD:459654 15/40 (38%)
LY 553..595 CDD:214531 9/41 (22%)
LY 596..637 CDD:214531 14/40 (35%)
FXa_inhibition 669..700 CDD:464251 9/32 (28%)
LY 774..815 CDD:214531
LDLa 1032..1062 CDD:238060
LDLa 1074..1109 CDD:238060
LDLa 1118..1152 CDD:238060
LDLa 1157..1189 CDD:197566
LDLa 1198..1232 CDD:238060
LDLa 1243..1279 CDD:238060
LDLa 1283..1318 CDD:238060
LDLa 1340..1371 CDD:197566
FXa_inhibition 1388..1416 CDD:464251
EGF_CA 1418..1452 CDD:214542
rme-2NP_500815.2 LDLa 37..69 CDD:238060
LDLa 75..109 CDD:238060 13/33 (39%)
LDLa 137..171 CDD:238060 14/36 (39%)
FXa_inhibition 309..337 CDD:464251 10/30 (33%)
vWFA <337..375 CDD:469594 16/37 (43%)
Ldl_recept_b 527..569 CDD:459654 15/41 (37%)
LY 552..594 CDD:214531 9/41 (22%)
LY 595..634 CDD:214531 15/42 (36%)
Blue background indicates that the domain is not in the aligned region.

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