DRSC/TRiP Functional Genomics Resources

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Protein Alignment yl and Lrp8

DIOPT Version :10

Sequence 1:NP_996433.1 Gene:yl / 32367 FlyBaseID:FBgn0004649 Length:1984 Species:Drosophila melanogaster
Sequence 2:XP_011238756.1 Gene:Lrp8 / 16975 MGIID:1340044 Length:1010 Species:Mus musculus


Alignment Length:811 Identity:242/811 - (29%)
Similarity:360/811 - (44%) Gaps:211/811 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 RHVAISLLLLVGLCGGTAAG-TPGSAD--TRCDAGQFQCRDGGCILQAKMCDGRGDCKDSSDELD 123
            |.:|:.||||:.|...:||. .||...  ..|:..||:||:..||.....||...||.|:|||.|
Mouse    10 RPLALLLLLLLQLQHLSAADPLPGGQGPVKECEEDQFRCRNERCIPLVWRCDEDNDCSDNSDEDD 74

  Fly   124 CDYRLCRPPHWFPCAQPHGACLAAELMCNGIDNCPGGEDEL-------NCPVRPGFRFGDTAHRM 181
            |..|.|.... |.|  .:|.|:.....|:|.:.||.|.||.       .||... ...|.|:|: 
Mouse    75 CPKRTCADSD-FTC--DNGHCIPERWKCDGEEECPDGSDESKATCSSEECPAEK-LSCGPTSHK- 134

  Fly   182 RSCSKYEFMCQQDRTCIPIDFMCDGRPDCTDKSDEVAGCKQAEITCPGEGHLCANGRCLRRKQWV 246
                           |:|..:.|||..||...:|| |||   ...|......|:|..|| ...:|
Mouse   135 ---------------CVPASWRCDGEKDCEGGADE-AGC---PTLCAPHEFQCSNRSCL-ASVFV 179

  Fly   247 CDGVDDCGDGSDERGCLN--------------LCEPQK--------------------------- 270
            |||.||||||||||||.:              .|.|::                           
Mouse   180 CDGDDDCGDGSDERGCSDPACPPREFRCGGGGTCIPERWVCDRQFDCEDRSDEAAELCGRAGQGT 244

  Fly   271 ----------GKFLCRNRETCLTLSEVCDGHSDCSDGSDETDL---------------------- 303
                      .:|.||:.| |:.|...|||..||.|.|||.|.                      
Mouse   245 TATPAACAPTAQFTCRSGE-CIHLGWRCDGDRDCKDKSDEADCSAPGPCRENEFQCGDGTCVLAI 308

  Fly   304 --CHSKPDC----DAKKCALGAKCH---------------------------------------M 323
              |:.:.||    |...|...:.|.                                       .
Mouse   309 KRCNQERDCPDGSDEAGCLQESTCEGPRRFQCKSGECVDGGKVCDDQRDCRDWSDEPQKVCVAPS 373

  Fly   324 MPAS--------------------------GAECFCPKGFRLAKFEDKCEDVDECKEQDDLCSQG 362
            .|.:                          |.||.||.||:|.. :..|.|:|||:: .|.|||.
Mouse   374 FPGNRRHPRGLNECLHNNGGCSHICTDLKIGFECTCPAGFQLLD-QKTCGDIDECQD-PDACSQI 436

  Fly   363 CENTSGGYRCVCDAGYLLDKDNRTCRAVVYGSKEQQPLLLYTTQMTIMGMHLREDNVRNHVYQVA 427
            |.|..|.::|.|..||.:|...:.|:||.    .:.|.|::|.:..:.    |.|.|:....::.
Mouse   437 CVNYKGYFKCECHPGYEMDTLTKNCKAVA----GKSPSLIFTNRHEVR----RIDLVKRDYSRLI 493

  Fly   428 GNLSKVIG--VAYDGSHIYWTNIQNEAESIVKANGDGSNAE----ILLTSGLDAPEDLAVDWLTQ 486
            ..|..|:.  |....:.|||.::  ....|..|:.|.::..    :|:...|.:||.|||||:.:
Mouse   494 PMLKNVVALDVEVATNRIYWCDL--SYRKIYSAHMDKASIPDEQVVLIDEQLHSPEGLAVDWVHK 556

  Fly   487 NIYFSDNIMRHIAVCSNDGLNCAVLVTQDVHQPRSLAVWPQKGLMFWTDWGEKPMIGRASMDGSR 551
            :||::|:..:.|:|.:.||.....|.::::.:||::||.|.:|.|:|:|||.:..|.:|.::|:.
Mouse   557 HIYWTDSGNKTISVATTDGRRRCTLFSRELSEPRAIAVDPLRGFMYWSDWGFQAKIEKAGLNGAD 621

  Fly   552 SRPIVSDNIEWPNGIALDMHQQRIYWVDAKLGSVQTVRPDGTGRRTVL--DGMLKHPYGLAIFED 614
            .:.:|||||||||||.||:..||:||||:||..:.::..:|..|:.::  ...|.||:|:|:|||
Mouse   622 RQTLVSDNIEWPNGITLDLLSQRLYWVDSKLHQLSSIDFNGGNRKMLIFSTDFLSHPFGVAVFED 686

  Fly   615 QLYWSDWATKSVHACHKFSGKDHRILAKD-RTIYAVHIYHPAKQPNSPHGCE-----NATCSHLC 673
            :::|:|...:::.:.::.:|.:..|||:: ...:.:.|:|..|||.:...|:     |..|.:||
Mouse   687 KVFWTDLENEAIFSANRLNGLEIAILAENLNNPHDIVIFHELKQPKAADACDLSAQPNGGCEYLC 751

  Fly   674 LLAEPEIGGHS----CACPDGMRLAPDHRRC 700
            |.| |:|..||    |||||.|.|.||.:||
Mouse   752 LPA-PQISSHSPKYTCACPDTMWLGPDMKRC 781

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ylNP_996433.1 LDLa 90..124 CDD:238060 15/33 (45%)
LDLa 131..166 CDD:238060 11/41 (27%)
LDLa 184..216 CDD:238060 7/31 (23%)
LDLa 227..262 CDD:238060 19/34 (56%)
LDLa 271..302 CDD:238060 15/30 (50%)
FXa_inhibition 352..387 CDD:464251 13/34 (38%)
Ldl_recept_b 442..483 CDD:459654 13/44 (30%)
LY 466..508 CDD:214531 16/45 (36%)
Ldl_recept_b 529..569 CDD:459654 20/39 (51%)
LY 553..595 CDD:214531 22/41 (54%)
LY 596..637 CDD:214531 11/42 (26%)
FXa_inhibition 669..700 CDD:464251 18/34 (53%)
LY 774..815 CDD:214531
LDLa 1032..1062 CDD:238060
LDLa 1074..1109 CDD:238060
LDLa 1118..1152 CDD:238060
LDLa 1157..1189 CDD:197566
LDLa 1198..1232 CDD:238060
LDLa 1243..1279 CDD:238060
LDLa 1283..1318 CDD:238060
LDLa 1340..1371 CDD:197566
FXa_inhibition 1388..1416 CDD:464251
EGF_CA 1418..1452 CDD:214542
Lrp8XP_011238756.1 LDLa 41..75 CDD:238060 15/33 (45%)
LDLa 79..111 CDD:197566 10/34 (29%)
LDLa 121..157 CDD:238060 15/53 (28%)
LDLa 200..232 CDD:197566 2/31 (6%)
LDLa 256..286 CDD:238060 15/30 (50%)
LDLa 292..326 CDD:238060 4/33 (12%)
Ldl_recept_a 330..366 CDD:395011 1/35 (3%)
FXa_inhibition 387..421 CDD:464251 8/34 (24%)
EGF_CA 423..453 CDD:214542 14/30 (47%)
LY 492..527 CDD:214531 8/36 (22%)
LY 537..578 CDD:214531 16/40 (40%)
Ldl_recept_b 599..639 CDD:459654 20/39 (51%)
LY 623..665 CDD:214531 22/41 (54%)
Ldl_recept_b 686..726 CDD:459654 8/39 (21%)
FXa_inhibition 744..781 CDD:464251 19/37 (51%)
Blue background indicates that the domain is not in the aligned region.

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