DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment yl and Dgcr2

DIOPT Version :9

Sequence 1:NP_996433.1 Gene:yl / 32367 FlyBaseID:FBgn0004649 Length:1984 Species:Drosophila melanogaster
Sequence 2:NP_034178.2 Gene:Dgcr2 / 13356 MGIID:892866 Length:549 Species:Mus musculus


Alignment Length:402 Identity:87/402 - (21%)
Similarity:127/402 - (31%) Gaps:130/402 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 NGRHVAISLLLLVGLCGGTAAGTPGSADTRCDAGQFQCRDG--GCILQAKMCDGRGDCKDSSDEL 122
            :|..:.:.||:|       ....|...:.||:.|||.|..|  .||.....|||...|:|.|||.
Mouse     7 SGAFLLLFLLVL-------TVTEPLRPELRCNPGQFACHGGTIQCIPLPWQCDGWPTCEDKSDEA 64

  Fly   123 DC---------------DYRLCR-----PPHWFP--CAQPHGACLAAELMCNGIDNCPGG----E 161
            ||               |.|..|     |.|:..  .|||       ....:.:..||.|    |
Mouse    65 DCPEVTGEARPYGKETVDLRQGRARGGDPTHFHTVNVAQP-------VRFSSFLGKCPSGWHHYE 122

  Fly   162 DELNC--PVRPGFRFGDTAHRMRSCSK-------------YEFMCQQD--------------RTC 197
            ...:|  ....|..:.|.|   ::|.:             ..|:..|:              :..
Mouse   123 GTASCYRVYLSGENYWDAA---QTCQRVNGSLATFSTDQELRFVLAQEWDQPERSFGWKDQRKLW 184

  Fly   198 IPIDFMCDGRPDCTDKSDEVAGCKQAEITCP-----------GEGHLCANGRC-----LRRKQWV 246
            :...::..||....:...|||.....|:..|           .:...||..:|     ||.....
Mouse   185 VGYQYVITGRNHSLEGRWEVAFKGSPEVFLPPDPIFASAMSENDNVFCAQLQCFHFPTLRHHDLH 249

  Fly   247 CDGVDDCGDGSDERGCLNLCEPQKGKFLCRNRETCLTLSE--VCDGHSDCSDGSDE--TDLCH-S 306
            ....:.|.              :|..|||:..:||:.:.:  |.:|......|.|.  :..|| .
Mouse   250 SWHAESCS--------------EKSSFLCKRSQTCVDIKDNVVDEGFYFTPKGDDPCLSCTCHRG 300

  Fly   307 KPD-CDAKKCALGAKCHMMPASGAECFCPKGFRLAKFEDKCEDVDECKEQDDLCSQGCENTSGGY 370
            :|: |.|..|.....|........||        .||  .|.|.|.....|.:.|        |.
Mouse   301 EPEMCVAALCERPQGCQQYRKDPKEC--------CKF--MCLDPDGSSLFDSMAS--------GM 347

  Fly   371 RCV--CDAGYLL 380
            |.|  |.:.:|:
Mouse   348 RLVVSCISSFLI 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ylNP_996433.1 LDLa 90..124 CDD:238060 16/35 (46%)
LDLa 131..166 CDD:238060 9/40 (23%)
LDLa 184..216 CDD:238060 5/58 (9%)
LDLa 227..262 CDD:238060 7/50 (14%)
LDLa 271..302 CDD:238060 9/34 (26%)
FXa_inhibition 352..387 CDD:291342 7/31 (23%)
Ldl_recept_b 442..482 CDD:278487
LY 466..508 CDD:214531
Ldl_recept_b 529..569 CDD:278487
LY 553..595 CDD:214531
LY 596..637 CDD:214531
FXa_inhibition 669..700 CDD:291342
LY 774..815 CDD:214531
LDLa 1032..1062 CDD:238060
LDLa 1074..1109 CDD:238060
LDLa 1118..1152 CDD:238060
LDLa 1157..1189 CDD:197566
LDLa 1198..1232 CDD:238060
LDLa 1243..1279 CDD:238060
LDLa 1283..1318 CDD:238060
LDLa 1340..1371 CDD:197566
FXa_inhibition 1388..1416 CDD:291342
EGF_CA 1418..1452 CDD:214542
Dgcr2NP_034178.2 LDLa 30..66 CDD:238060 16/35 (46%)
CLECT_DGCR2_like 114..266 CDD:153069 28/168 (17%)
VWC 270..328 CDD:214564 14/65 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 416..549
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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