DRSC/TRiP Functional Genomics Resources

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Protein Alignment yl and ldlr

DIOPT Version :10

Sequence 1:NP_996433.1 Gene:yl / 32367 FlyBaseID:FBgn0004649 Length:1984 Species:Drosophila melanogaster
Sequence 2:XP_002942891.1 Gene:ldlr / 100495826 XenbaseID:XB-GENE-962372 Length:894 Species:Xenopus tropicalis


Alignment Length:742 Identity:238/742 - (32%)
Similarity:354/742 - (47%) Gaps:146/742 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 SLLLLVGLCGGTAAGTPGSADTRCDAGQFQCRDGGCILQAKMCDGRGDCKDSSDE---------- 121
            |.|||:|||..:|.    |...:||..:|||.||.||....:|||..:|||.|||          
 Frog    10 SFLLLLGLCHVSAI----SEVRKCDRSEFQCGDGKCIPYKWICDGSAECKDGSDESPETCKVVTC 70

  Fly   122 ----LDCDYRL--CRPPHW--------------------------FPCAQPHGACLAAELMCNGI 154
                ..|..||  |.|..|                          |.|..  |.|::.:.:|:..
 Frog    71 GADHFSCGGRLNRCIPLLWKCDGQTDCENGSDENDCTRKVCADDQFTCRS--GKCISLDFVCDED 133

  Fly   155 DNCPGGEDELNCPVRPGFRFGDTAHRMRSCSKYEFMCQQDRTCIPIDFMCDGRPDCTDKSDEVAG 219
            .:|..|.||..||.             .:|:...|.|:....|||..:.|||.|||.|.||| ..
 Frog   134 LDCDDGSDESYCPA-------------PTCNPAMFQCKDKGICIPKLWACDGDPDCEDGSDE-QH 184

  Fly   220 CK-----QAEITC-PGEGHLCANGRCLRRKQWVCDGVDDCGDGSDERGCLN-LCEPQKGKFLCRN 277
            |:     :.:..| |.|.| |.:|.|: ...|.|||..||.|.|||:.|:. .|.|.  :|.| |
 Frog   185 CEGREPIKTDKPCSPLEFH-CGSGECI-HMSWKCDGGYDCKDKSDEKDCVKPTCRPD--EFQC-N 244

  Fly   278 RETCLTLSEVCDGHSDCSDGSDE-------------------------TDLCHSKPDC------D 311
            ..||:..|..||...||.|.|||                         ..:|:.|.||      .
 Frog   245 DGTCIHGSRQCDREYDCKDLSDEEGCVNVTKCEGPDVFKCRSGECITMDKVCNKKRDCRDWSDEP 309

  Fly   312 AKKCA-------LGAKCHMMP--ASGAECFCPKGFRLAKFEDKCEDVDECKEQDDLCSQGCENTS 367
            .|:|.       .|...|:..  ..|.||.|.:|:||.. :.:|||::|| |..:.|||.|.|..
 Frog   310 IKECGENECMRNNGGCAHICNDLKIGYECLCNEGYRLVD-KKRCEDINEC-ENPNTCSQICINLD 372

  Fly   368 GGYRCVCDAGYLLDKDNRTCRA---VVYGSKEQQPLLLYTTQMTIMGMHLREDNVRNHVYQVAGN 429
            |||:|.|..||.:|....:|::   |.|        |.:|.:..:..|.|......:.:.::...
 Frog   373 GGYKCECREGYQMDPVTASCKSIGTVAY--------LFFTNRHEVRKMTLDRSEYTSFIPRLKNV 429

  Fly   430 LSKVIGVAYDGSHIYWTNIQNE---AESIVKANGDGSNAEILLTSGLDAPEDLAVDWLTQNIYFS 491
            ::..:.:|  .:.|||:::...   :.|:.||: :.|:.|.:::|.:.||:.:||||:..|||::
 Frog   430 VALDMEIA--SNKIYWSDLTQRKIYSASMDKAD-NTSHHETVISSQIQAPDGIAVDWIHGNIYWT 491

  Fly   492 DNIMRHIAVCSNDGLNCAVLVTQDVHQPRSLAVWPQKGLMFWTDWGEKPMIGRASMDGSRSRPIV 556
            |:....|:|.:.:|.....|.:.|:.:||.:.|.|.:|.|:|||||....|.:..::|....|:|
 Frog   492 DSKFSTISVANTEGSKRKTLFSDDLAKPRDIVVDPSQGFMYWTDWGLPAKIEKGGLNGVDRYPLV 556

  Fly   557 SDNIEWPNGIALDMHQQRIYWVDAKLGSVQTVRPDGTGRRTVL--DGMLKHPYGLAIFEDQLYWS 619
            ::||||||||.||:..||:||||:||.|:..:...|..|.||:  :..|.||:||.:|||.::|:
 Frog   557 TENIEWPNGITLDLTNQRLYWVDSKLHSLSCIDVTGQNRITVISDETHLAHPFGLTVFEDLVFWT 621

  Fly   620 DWATKSVHACHKFSGKDHRILAKD-RTIYAVHIYHPAKQPNSPHGCE-----NATCSHLCLLAEP 678
            |...:::.:.::.:|.:...:|:| .:...:.:||..:||.:.:.||     |..|.:|||.| |
 Frog   622 DIENEAIFSANRLTGSNITKVAEDLLSPEDIVLYHNLRQPKAENWCESHHLGNGGCEYLCLPA-P 685

  Fly   679 EIGGHS----CACPDGMRLAPDHRRCM 701
            .|...|    |||||||.|..|.|.|:
 Frog   686 LITSRSPKFTCACPDGMHLGADMRSCV 712

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ylNP_996433.1 LDLa 90..124 CDD:238060 18/47 (38%)
LDLa 131..166 CDD:238060 11/60 (18%)
LDLa 184..216 CDD:238060 14/31 (45%)
LDLa 227..262 CDD:238060 17/35 (49%)
LDLa 271..302 CDD:238060 14/55 (25%)
FXa_inhibition 352..387 CDD:464251 15/34 (44%)
Ldl_recept_b 442..483 CDD:459654 13/43 (30%)
LY 466..508 CDD:214531 15/41 (37%)
Ldl_recept_b 529..569 CDD:459654 19/39 (49%)
LY 553..595 CDD:214531 22/41 (54%)
LY 596..637 CDD:214531 13/42 (31%)
FXa_inhibition 669..700 CDD:464251 18/34 (53%)
LY 774..815 CDD:214531
LDLa 1032..1062 CDD:238060
LDLa 1074..1109 CDD:238060
LDLa 1118..1152 CDD:238060
LDLa 1157..1189 CDD:197566
LDLa 1198..1232 CDD:238060
LDLa 1243..1279 CDD:238060
LDLa 1283..1318 CDD:238060
LDLa 1340..1371 CDD:197566
FXa_inhibition 1388..1416 CDD:464251
EGF_CA 1418..1452 CDD:214542
ldlrXP_002942891.1 Ldl_recept_a 27..60 CDD:395011 16/32 (50%)
Ldl_recept_a 68..106 CDD:395011 6/37 (16%)
LDLa 111..145 CDD:238060 9/35 (26%)
LDLa 150..185 CDD:238060 16/35 (46%)
Ldl_recept_a 195..231 CDD:395011 17/37 (46%)
Ldl_recept_a 235..270 CDD:395011 16/37 (43%)
Ldl_recept_a 278..308 CDD:395011 4/29 (14%)
FXa_inhibition 318..352 CDD:464251 9/34 (26%)
EGF_CA 354..384 CDD:214542 15/30 (50%)
LY 419..457 CDD:214531 5/39 (13%)
Ldl_recept_b 439..483 CDD:459654 13/44 (30%)
Ldl_recept_b 486..526 CDD:459654 12/39 (31%)
Ldl_recept_b 529..569 CDD:459654 19/39 (49%)
LY 555..595 CDD:214531 21/39 (54%)
Ldl_recept_b 616..656 CDD:459654 6/39 (15%)
FXa_inhibition 674..711 CDD:464251 19/37 (51%)
Blue background indicates that the domain is not in the aligned region.

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