DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment yl and lrp8

DIOPT Version :9

Sequence 1:NP_996433.1 Gene:yl / 32367 FlyBaseID:FBgn0004649 Length:1984 Species:Drosophila melanogaster
Sequence 2:XP_004914072.1 Gene:lrp8 / 100489827 XenbaseID:XB-GENE-980035 Length:936 Species:Xenopus tropicalis


Alignment Length:927 Identity:279/927 - (30%)
Similarity:429/927 - (46%) Gaps:206/927 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 GRHVAISLLLLVGLCGGTAAGTPGSADTRCDAGQFQCRDGGCILQAKMCDGRGDCKDSSDELDC- 124
            |....:.|||::|..||..   |.::|  |:.||||||:..||.....||...||.|:|||.|| 
 Frog     8 GAMPGLLLLLVLGTRGGRG---PTTSD--CEEGQFQCRNQRCIPSVWRCDEDDDCADNSDEDDCP 67

  Fly   125 ------DYRLCRPPH-----W------------------------------FPCAQP-------- 140
                  |...|...|     |                              |.|..|        
 Frog    68 KTTCGEDEFTCNSGHCISARWKCDGEEECPDKSDESEATCSSAKQVCAAQKFSCGGPSNKCIPVS 132

  Fly   141 ------------------------------HGACLAAELMCNGIDNCPGGEDELNC-PV--RPG- 171
                                          :..|||:..:|:|::||..|.||..| |:  :|| 
 Frog   133 WRCDGERDCENGLDEKDCPTSCTPGEFQCNNKTCLASVFVCDGVNNCGDGSDERGCLPITCKPGE 197

  Fly   172 FRFGDT-----------------------AH--------RMRSCSKYEFMCQQDRTCIPIDFMCD 205
            ||.|:.                       ||        .:..|.::||.| .:..||.:::.||
 Frog   198 FRCGNNECILEKWLCDGQPDCDDQSDESEAHCGLKNQPQAITQCGEHEFRC-NNGNCILLNWRCD 261

  Fly   206 GRPDCTDKSDEVAGCKQAEITCPGEGHLCANGRCLR-RKQWVCDGVDDCGDGSDERGCLNLCEPQ 269
            |..||.|||||: .|..|  ||..:...|.:|.|:. .||  |:||.||.|.|||.||.:...|.
 Frog   262 GDEDCKDKSDEM-DCHLA--TCRPDEFQCGDGSCVHGMKQ--CNGVRDCLDSSDEAGCQSAHSPC 321

  Fly   270 K--GKFLCRNRETCLTLSEVCDGHSDCSDGSDETDLCHSKPDCDAKKCAL--GAKCHMMP--ASG 328
            :  |:|.|::.| |:..::||||:.||.|.|||     |...||..:|.:  |...|:..  ..|
 Frog   322 EGDGRFQCKSGE-CIDSTKVCDGNRDCRDWSDE-----SLTACDINECMVNNGGCSHICRDLKVG 380

  Fly   329 AECFCPKGFRLAKFEDK--CEDVDECKEQDDLCSQGCENTSGGYRCVCDAGYLLDKDNRTCRAVV 391
            .||.||.|::|.   ||  |.|:||| |..|.|||.|.|..|.::|.|..||.:|..::||:|| 
 Frog   381 YECDCPVGYKLM---DKKTCGDIDEC-ENPDACSQICVNYKGDFKCECYEGYEMDSVSKTCKAV- 440

  Fly   392 YGSKEQQPLLLYTTQMTIMGMHLRE-DNVRNHVYQVAGNLSKVIG--VAYDGSHIYWTNI--QNE 451
                .|.|.|::|.:     ..||: |.|.....::|..|..|:.  |......|||.::  :..
 Frog   441 ----GQNPYLIFTNR-----HELRQIDIVHRDYSRLAAQLKNVVSLDVEVTSRMIYWCDLYYRRI 496

  Fly   452 AESIVKANGDGSNAEILLTSGLDAPEDLAVDWLTQNIYFSDNIMRHIAVCSNDGLNCAVLVTQDV 516
            ..:.:....|.|...:::.:.|.:||.||:||:.:|||::|:..:.|:|.:.||.....|....:
 Frog   497 YSAPLDRAADPSEHVVIINTTLHSPEGLAIDWIHKNIYWTDSGNKTISVATADGCKRKTLFRNGL 561

  Fly   517 HQPRSLAVWPQKGLMFWTDWGEKPMIGRASMDGSRSRPIVSDNIEWPNGIALDMHQQRIYWVDAK 581
            .:||::||.|.:|.|||:|||:...|.:|.::|...:.:|||||||||||.||:...|:||||:|
 Frog   562 GEPRAIAVDPVQGFMFWSDWGDPAKIEKAGLNGGDRQVLVSDNIEWPNGITLDVLGCRLYWVDSK 626

  Fly   582 LGSVQTVRPDGTGRRTVL--DGMLKHPYGLAIFEDQLYWSDWATKSVHACHKFSGKDHRILAKD- 643
            |.::.:|..:|..|:.::  :..|.||:|||:|||:::|:|...:::.:.::.:|.:..|||.: 
 Frog   627 LHTLSSVDFNGFNRKLLISSEDSLSHPFGLAVFEDKIFWTDLENEAIFSANRLTGHEISILADNL 691

  Fly   644 RTIYAVHIYHPAKQPNSPHGCE-----NATCSHLCLLAEPEIGGHS----CACPDGMRLAPDHRR 699
            ...:.:.:.|..|||.:.:.|.     |..|.:|||.| |:|..||    ||||||:.|.||.|.
 Frog   692 NNPHDIVVVHQLKQPKAVNACNQGSLPNGGCEYLCLPA-PQISAHSPKYTCACPDGIALGPDMRS 755

  Fly   700 CMLMEKRQRLFIGLGQVLLEIEHTAFGRHQVSKSYTLPCLINEMVYNRINGSLIIADNDQRLILE 764
            |      :::.:...:.|.::.:..   |....|.|.....:.:..:....:...|..:..|...
 Frog   756 C------EKVTVATSKPLADVTNAI---HHPEASTTAEMTTSALPTSSYTTTTTAATTEISLNYS 811

  Fly   765 FQPESHESNVLVR------SNLGNVSALAFDHLSRNLYWADTERAVIEVLSLQTRHRALIRFFPG 823
            ....:|:::.|.|      .|.||.|.        :|.:.:::..:...|:     .|:|    |
 Frog   812 SLTNTHQNSSLSRDRDARNKNTGNSSL--------SLTYGNSDSDLSSTLT-----AAVI----G 859

  Fly   824 QEVPIG-LTVMPAEGYL 839
            ..||:. |.::...|||
 Frog   860 VAVPLAVLALLCLLGYL 876

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ylNP_996433.1 LDLa 90..124 CDD:238060 17/33 (52%)
LDLa 131..166 CDD:238060 15/107 (14%)
LDLa 184..216 CDD:238060 14/31 (45%)
LDLa 227..262 CDD:238060 15/35 (43%)
LDLa 271..302 CDD:238060 15/30 (50%)
FXa_inhibition 352..387 CDD:291342 14/34 (41%)
Ldl_recept_b 442..482 CDD:278487 10/41 (24%)
LY 466..508 CDD:214531 15/41 (37%)
Ldl_recept_b 529..569 CDD:278487 21/39 (54%)
LY 553..595 CDD:214531 22/41 (54%)
LY 596..637 CDD:214531 12/42 (29%)
FXa_inhibition 669..700 CDD:291342 19/34 (56%)
LY 774..815 CDD:214531 8/46 (17%)
LDLa 1032..1062 CDD:238060
LDLa 1074..1109 CDD:238060
LDLa 1118..1152 CDD:238060
LDLa 1157..1189 CDD:197566
LDLa 1198..1232 CDD:238060
LDLa 1243..1279 CDD:238060
LDLa 1283..1318 CDD:238060
LDLa 1340..1371 CDD:197566
FXa_inhibition 1388..1416 CDD:291342
EGF_CA 1418..1452 CDD:214542
lrp8XP_004914072.1 LDLa 32..66 CDD:238060 17/33 (52%)
LDLa 70..102 CDD:197566 4/31 (13%)
Ldl_recept_a 114..150 CDD:365841 3/35 (9%)
LDLa 154..188 CDD:238060 10/33 (30%)
LDLa 192..224 CDD:197566 5/31 (16%)
LDLa 241..275 CDD:238060 16/35 (46%)
Ldl_recept_a 279..314 CDD:365841 16/36 (44%)
LDLa 323..353 CDD:238060 13/30 (43%)
FXa_inhibition 363..397 CDD:373209 12/36 (33%)
EGF_CA 399..429 CDD:214542 15/30 (50%)
LY 467..502 CDD:214531 7/34 (21%)
LY 512..553 CDD:214531 15/40 (38%)
Ldl_recept_b 574..614 CDD:278487 21/39 (54%)
LY 598..640 CDD:214531 22/41 (54%)
Ldl_recept_b 661..699 CDD:278487 7/37 (19%)
FXa_inhibition 719..756 CDD:373209 20/37 (54%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002088
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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