DRSC/TRiP Functional Genomics Resources

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Protein Alignment yl and lrp3

DIOPT Version :9

Sequence 1:NP_996433.1 Gene:yl / 32367 FlyBaseID:FBgn0004649 Length:1984 Species:Drosophila melanogaster
Sequence 2:XP_009301583.1 Gene:lrp3 / 100170796 ZFINID:ZDB-GENE-080116-3 Length:824 Species:Danio rerio


Alignment Length:400 Identity:104/400 - (26%)
Similarity:134/400 - (33%) Gaps:152/400 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly  1101 HDHSDEQ-HCEKFDKS--------KKCHVHQHGCDNGKCVDSSLVCDGTNDCGDNSDELLCEA-- 1154
            |.|::.. ..:.|..|        ..|...::.|.|||||..|..|:|.::||||:||..|.|  
Zfish   125 HSHANSSGQAQGFRMSYIRGRLGQSSCEKDEYLCGNGKCVPRSWRCNGLDECGDNTDERNCVAPP 189

  Fly  1155 ----TSRCEPGMFQCG---SGSCIAGSWECDGRIDCSDGSDEHDKCVHRSC------------PP 1200
                .|.|.||..||.   |..|:.||..|:|..||.||||| .:|...||            .|
Zfish   190 TPARASLCPPGTLQCSDVQSTRCLPGSLRCNGARDCPDGSDE-ARCPDTSCGKRLVNFYGTFASP 253

  Fly  1201 DMQR----------CL------------------------------LGQCLDRSLVCDGHND--- 1222
            |..|          |.                              ||:..:|.|....|::   
Zfish   254 DFFRPNRSTGTDLHCTWFLDTKDPKPLVLQVDLQLGVGDSVRVYDGLGEQAERLLQSLSHHNNHR 318

  Fly  1223 -------CGDKS--------------------------DELNCGTDSSTMNISCAEDQYQCTSNL 1254
                   .|..|                          .|..||||..            |.|:|
Zfish   319 RALLESSQGQMSIFYHAKPHSPGHGFNATYQVKGYCFPGEHPCGTDEG------------CYSDL 371

  Fly  1255 KICLPSTVRCNGTTECPRGEDEADCGDVCSIYEFKCRSGR-ECIRREFRCDGQKDCGDGSDELSC 1318
            :       ||:|...||.|.||..| .:|...|:.|..|. .|.....||:.||.|.|||||.:|
Zfish   372 Q-------RCDGYWHCPGGRDEEAC-PLCQPGEYPCEGGSGACYSASERCNNQKKCPDGSDEKNC 428

  Fly  1319 ELEKGHHNQSQIQPWSTSSRSCRPHLFDCQDGECVDLSRVCNNFPDCTNGHDEGPKCATACR--- 1380
                               ..|:|..|.|....|:..:..|:...||.:|.||....|:..|   
Zfish   429 -------------------FDCQPGNFHCGTNLCIFETWRCDGQEDCMDGSDERDCLASVPRKVI 474

  Fly  1381 --SASGRQVC 1388
              :..|..||
Zfish   475 TAALIGSLVC 484

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
ylNP_996433.1 LDLa 90..124 CDD:238060
LDLa 131..166 CDD:238060
LDLa 184..216 CDD:238060
LDLa 227..262 CDD:238060
LDLa 271..302 CDD:238060
FXa_inhibition 352..387 CDD:291342
Ldl_recept_b 442..482 CDD:278487
LY 466..508 CDD:214531
Ldl_recept_b 529..569 CDD:278487
LY 553..595 CDD:214531
LY 596..637 CDD:214531
FXa_inhibition 669..700 CDD:291342
LY 774..815 CDD:214531
LDLa 1032..1062 CDD:238060
LDLa 1074..1109 CDD:238060 2/8 (25%)
LDLa 1118..1152 CDD:238060 16/33 (48%)
LDLa 1157..1189 CDD:197566 16/34 (47%)
LDLa 1198..1232 CDD:238060 13/121 (11%)
LDLa 1243..1279 CDD:238060 11/35 (31%)
LDLa 1283..1318 CDD:238060 15/35 (43%)
LDLa 1340..1371 CDD:197566 9/30 (30%)