DRSC/TRiP Functional Genomics Resources

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Protein Alignment yl and lrp12

DIOPT Version :10

Sequence 1:NP_996433.1 Gene:yl / 32367 FlyBaseID:FBgn0004649 Length:1984 Species:Drosophila melanogaster
Sequence 2:NP_001076537.2 Gene:lrp12 / 100034487 ZFINID:ZDB-GENE-060503-399 Length:874 Species:Danio rerio


Alignment Length:427 Identity:103/427 - (24%)
Similarity:156/427 - (36%) Gaps:153/427 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly  1029 LDCEF--RCHSGECLTM---------NHRC-------------NGRRDCVD-------------- 1055
            ::|.:  |.:.||.:|:         :|||             :|.|.|..              
Zfish    70 INCSWNIRANPGEIITISFQDFEIQSSHRCGLDWISIGTYKNLDGYRACGSSIPAPYISSQDHVW 134

  Fly  1056 ---NSDEMNCDEEHR------RKPKVLCSPNQFACHSGEQCVDKERRCDNRKDCHDHSDEQHC-- 1109
               :||:....:..|      :..:..|.|:||.|.:| :|:.:..:|:...:|.|:|||:.|  
Zfish   135 IKFHSDDSMTGKGFRLSYVTGKSEEASCKPDQFHCANG-KCIPESWKCNTMDECGDNSDEELCVQ 198

  Fly  1110 ---EKFDKSKKCHVHQHGCDNG-----KCVDSSLVCDGTNDCGDNSDELLCEATSRCE------- 1159
               ..|...:.|..:|..|.:.     .|:..||.|||:.||.|..||:.|:..:..|       
Zfish   199 PNPSAFFSFQPCAFNQFPCLSRYTRVYTCLPESLKCDGSIDCQDLGDEIDCDVPTCGEWLRNFYG 263

  Fly  1160 -------PGMFQCGSGSCIAGSW-----------------ECDGR-----IDCSDGSDEHDKCVH 1195
                   |..:..|| :|   :|                 :.||.     :...||.:|:.:.:.
Zfish   264 TFSSPNYPDFYPPGS-NC---TWLIDTGDHRKVILRFMDFKLDGTGYGDYVKVYDGLEENPRRLL 324

  Fly  1196 RSCPPDMQR------------------------------------CLLGQ--------CLDRSLV 1216
            |.......|                                    ||..:        |......
Zfish   325 RVLTAFDSRAPVAVVSSSGQLRIHFYADKINAARGFNVTYQVDGFCLPWEIPCGGNWGCYTEQQR 389

  Fly  1217 CDGHNDCGDKSDELNCGTDSSTMNISCAEDQYQCTSNLKICLPSTVRCNGTTECPRGEDEADCGD 1281
            |||:..|.:..|||||.        :|.||::.|:.| ..|.|.:.|||....||.|.||.:| .
Zfish   390 CDGYWHCPNGRDELNCS--------NCQEDEFPCSRN-GACYPRSDRCNYQNRCPNGSDEKNC-F 444

  Fly  1282 VCSIYEFKCRSGRECIRREFRCDGQKDCGDGSDELSC 1318
            .|....|.|::.| |:...:.||.|.||||||||.||
Zfish   445 FCQPGNFHCKNNR-CVFESWVCDAQDDCGDGSDEESC 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ylNP_996433.1 LDLa 90..124 CDD:238060
LDLa 131..166 CDD:238060
LDLa 184..216 CDD:238060
LDLa 227..262 CDD:238060
LDLa 271..302 CDD:238060
FXa_inhibition 352..387 CDD:464251
Ldl_recept_b 442..483 CDD:459654
LY 466..508 CDD:214531
Ldl_recept_b 529..569 CDD:459654
LY 553..595 CDD:214531
LY 596..637 CDD:214531
FXa_inhibition 669..700 CDD:464251
LY 774..815 CDD:214531
LDLa 1032..1062 CDD:238060 12/70 (17%)
LDLa 1074..1109 CDD:238060 13/34 (38%)
LDLa 1118..1152 CDD:238060 14/38 (37%)
LDLa 1157..1189 CDD:197566 10/67 (15%)
LDLa 1198..1232 CDD:238060 11/77 (14%)
LDLa 1243..1279 CDD:238060 15/35 (43%)
LDLa 1283..1318 CDD:238060 16/34 (47%)
LDLa 1340..1371 CDD:197566
FXa_inhibition 1388..1416 CDD:464251
EGF_CA 1418..1452 CDD:214542
lrp12NP_001076537.2 None
Blue background indicates that the domain is not in the aligned region.

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