DRSC/TRiP Functional Genomics Resources

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Protein Alignment ben and Ube2a

DIOPT Version :9

Sequence 1:NP_001162752.1 Gene:ben / 32358 FlyBaseID:FBgn0000173 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_001013955.1 Gene:Ube2a / 298317 RGDID:1359534 Length:162 Species:Rattus norvegicus


Alignment Length:140 Identity:54/140 - (38%)
Similarity:88/140 - (62%) Gaps:10/140 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEG----------GVFKLELFLPE 60
            ||::::.:||.::|..|::..|.|||...::.::.||..:|||.          |.|||.:...|
  Rat     7 RRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTHVETTGQLGTFKLTIEFTE 71

  Fly    61 DYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDV 125
            :||...|.|||::|::|||:...|.||||:|:::|||...:.:||.|||:||..|||:.|..:..
  Rat    72 EYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQA 136

  Fly   126 AELWKVNEAE 135
            |:|::.|:.|
  Rat   137 AQLYQENKRE 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
benNP_001162752.1 UBCc 3..149 CDD:412187 54/140 (39%)
Ube2aNP_001013955.1 UQ_con 8..155 CDD:395127 53/139 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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