DRSC/TRiP Functional Genomics Resources

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Protein Alignment ben and ubc-22

DIOPT Version :9

Sequence 1:NP_001162752.1 Gene:ben / 32358 FlyBaseID:FBgn0000173 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_509501.2 Gene:ubc-22 / 182322 WormBaseID:WBGene00006717 Length:182 Species:Caenorhabditis elegans


Alignment Length:149 Identity:36/149 - (24%)
Similarity:73/149 - (48%) Gaps:23/149 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSLPRRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMS 65
            |:...:|.:.:.:...|..:  |..:.:|:....||  :.||.|:|:|.|||:::|..|::||.:
 Worm     1 MNENQKRFLDDMEIAQQLYI--IEMVNEEDKKITFH--IAGPADTPYETGVFEVDLTFPDNYPNA 61

  Fly    66 APKVRFITKIYHPNID-RLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELW 129
            .|:::|.|.|::..:: ..|::.:    :.:| .|.:...|..|:.|..:...|:          
 Worm    62 LPQIKFQTLIWNCAVEPSTGQVHI----ENYS-RLNVSEALSYIEDLFRSIEVDE---------- 111

  Fly   130 KVNEAEAIRNAREWTQKYA 148
               |....:.||.||.::|
 Worm   112 ---EVMFYKTARFWTTEFA 127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
benNP_001162752.1 UBCc 3..149 CDD:412187 35/147 (24%)
ubc-22NP_509501.2 UBCc 5..128 CDD:294101 35/145 (24%)
UBA_like_SF 139..174 CDD:304366
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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