DRSC/TRiP Functional Genomics Resources

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Protein Alignment ben and ube2d4

DIOPT Version :9

Sequence 1:NP_001162752.1 Gene:ben / 32358 FlyBaseID:FBgn0000173 Length:151 Species:Drosophila melanogaster
Sequence 2:XP_012814892.1 Gene:ube2d4 / 100497147 XenbaseID:XB-GENE-962537 Length:159 Species:Xenopus tropicalis


Alignment Length:153 Identity:72/153 - (47%)
Similarity:96/153 - (62%) Gaps:4/153 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSLPR----RIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPED 61
            :||.|.    .:..|...|.::|....:|.|...:..::...:.|||||||:||||.|.:..|.|
 Frog     7 LSSFPTFINYSLSVELMDLQRDPPAQCSAGPVGEDLFHWQATIMGPNDSPFQGGVFFLTIHFPTD 71

  Fly    62 YPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVA 126
            ||...|||.|.||||||||:..|.||||:|:.:|||||.:..:||||.:||..|||||||..::|
 Frog    72 YPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIA 136

  Fly   127 ELWKVNEAEAIRNAREWTQKYAV 149
            ..:|.:..:..|.|||||||||:
 Frog   137 HTYKADREKYNRLAREWTQKYAM 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
benNP_001162752.1 UBCc 3..149 CDD:412187 70/149 (47%)
ube2d4XP_012814892.1 COG5078 21..159 CDD:227410 68/137 (50%)
UBCc 21..158 CDD:294101 67/136 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53976
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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