DRSC/TRiP Functional Genomics Resources

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Protein Alignment mamo and sp3a

DIOPT Version :9

Sequence 1:NP_572932.2 Gene:mamo / 32353 FlyBaseID:FBgn0267033 Length:1553 Species:Drosophila melanogaster
Sequence 2:XP_005167474.1 Gene:sp3a / 558652 ZFINID:ZDB-GENE-070410-111 Length:691 Species:Danio rerio


Alignment Length:800 Identity:170/800 - (21%)
Similarity:252/800 - (31%) Gaps:306/800 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   854 SGDTQYNKHAQQPQQPQTGGATGSGVGGLGGSPTAGASFNLRYPTPTAFYQQQQQQGKGAKSSPS 918
            |...|....|:|..||.......:...|| |||..||.                   .||.|:  
Zfish    16 SSSAQDGGGAEQDGQPSPLALLAATCTGL-GSPAPGAE-------------------NGASSN-- 58

  Fly   919 PQQMATSSTTVMSNDSGEDSCKRSSADSDEVTIMELP------SERSAQLYKESLEQLLQRQRRT 977
               .|::......:|....|.:|..|..|:..::.||      |.....|..:|| |.||.|   
Zfish    59 ---NASAGVNADLSDQLTSSTERWEAVRDDSGVLHLPGTGIVTSNGQYVLPLQSL-QGLQNQ--- 116

  Fly   978 PILAGSGSGSGSGT---------------------GSGSVIVDAAGLRQYTQLLLAGAGSGGASD 1021
            |||..||:.:.:|.                     ...|:..||.|   :.|:|..|..:...:.
Zfish   117 PILLTSGTDASAGAVPNIQYQVIPQVQTTDGQLGFSGASMAQDATG---HIQILPDGTQTISVTS 178

  Fly  1022 LKEKSSSSSTSSTPPLLTQ-----QLSQMLKSPSDTCSSLFSSSGGGTGSTGP-GITGETIEEET 1080
            ....|:|.|      |:||     |:.|:         ||.||:.||..:..| |:.|       
Zfish   179 ADVLSNSQS------LMTQTGQVHQIPQV---------SLGSSAFGGQVTNVPLGLPG------- 221

  Fly  1081 RCVVCNAHFPNVWLLEQHAALQHPHVGPGEEKPFICEQCGQSYRYRSAYAKHKEQNHRARLPADK 1145
                 |..|                                                   :|.:.
Zfish   222 -----NITF---------------------------------------------------VPINS 230

  Fly  1146 LFTCDVCGMQFRYLKSFKKHRLNHALERLHGKKSVGVIGRLGGSGSGPSSSAISVSVAAPTSVSA 1210
            :                                   .:..||.||:.|.:          |.::|
Zfish   231 V-----------------------------------DLDSLGLSGAQPIA----------TGITA 250

  Fly  1211 SGSVTSVDQDVVTSSQEPMLADEGEDLRVNVKREGTAD-----EQSAESRANDLEEHEQDNTVDS 1270
            .|.:...:|.|..|.:      .||..:..:....|||     ..|..|        .|..|:|.
Zfish   251 DGQLIMTNQSVENSEK------AGEQQQQTLSTNATADMFVPTTSSVSS--------SQATTIDG 301

  Fly  1271 AGI----TMLYQDNNSSASASTSATEPN------------ISSSDGIHSTNKRSRLHHLE----- 1314
            .|:    .:..:..:||...|..|.:.:            :.|:||..|...:..:.:::     
Zfish   302 TGVLTQQPVAGEQTDSSGYLSQGAVQVSGGQQVIQLQQLPLQSADGQASAQAQQTMQNIQLINPG 366

  Fly  1315 --------TDPSYPHHHHHHHHHHHQQQHHQAQHQHHNPQSQL---PTHLGHVSLPLVATSAAGS 1368
                    ..||          ...|.|..|.|...:....||   ||.  .::|..|.|.:.|.
Zfish   367 TFLIQAQTVTPS----------GQIQWQTFQVQGVQNLQNLQLQTAPTQ--QITLAPVQTLSLGQ 419

  Fly  1369 SSSAAAAAVVAAAQAQVSSGATGSGATGSGAPG--SGNVGSAGSSGAGGGISSLSSLTSLINAER 1431
            ..:..:          :|||.         .|.  |..|.:.|.:|.....|..:..|..|..:.
Zfish   420 GGTPVS----------LSSGQ---------MPNLQSVTVNTVGQAGIQFQQSEDTDSTGDIQIKE 465

  Fly  1432 IPNEQFLGLNPQ---EASILNFLRVDAAER------QRDKRPATSRFACP--------------- 1472
            .|:.:...|:..   .|:.|:.|||...|.      |..||.......||               
Zfish   466 EPDSEEWPLDSSSTLNANDLSHLRVRLVEEEMEALSQEGKRLRRVACTCPNCKEGGGRGSNMGKK 530

  Fly  1473 --------FCGKCVRSKENLKLHVRKHTGERPFVC--LFCGRAFGGKSDLTRHLRIHTGERPYHC 1527
                    .|||......:|:.|:|.|:|||||||  :|||:.|....:|.||.|.||||:.:.|
Zfish   531 KQHVCHIAGCGKVYGKTSHLRAHLRWHSGERPFVCTWMFCGKRFTRSDELQRHRRTHTGEKKFVC 595

  Fly  1528 ESCGKCFARADYLSKHLTTH 1547
            ..|.|.|.|:|:|:||:.||
Zfish   596 SECSKRFMRSDHLAKHIKTH 615

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mamoNP_572932.2 BTB 21..118 CDD:279045
BTB 32..118 CDD:197585
C2H2 Zn finger 1082..1105 CDD:275368 2/22 (9%)
C2H2 Zn finger 1116..1137 CDD:275368 0/20 (0%)
C2H2 Zn finger 1149..1169 CDD:275368 0/19 (0%)
zf-C2H2 1469..1491 CDD:278523 8/44 (18%)
C2H2 Zn finger 1471..1491 CDD:275368 8/42 (19%)
zf-H2C2_2 1483..1506 CDD:290200 14/24 (58%)
C2H2 Zn finger 1499..1519 CDD:275368 9/21 (43%)
zf-H2C2_2 1511..1536 CDD:290200 12/24 (50%)
C2H2 Zn finger 1527..1547 CDD:275368 9/19 (47%)
sp3aXP_005167474.1 Fimbrial 125..230 CDD:294848 28/185 (15%)
zf-C2H2 533..557 CDD:278523 6/23 (26%)
C2H2 Zn finger 535..557 CDD:275368 6/21 (29%)
COG5048 <548..619 CDD:227381 33/67 (49%)
zf-H2C2_2 549..576 CDD:290200 15/26 (58%)
C2H2 Zn finger 565..587 CDD:275368 9/21 (43%)
zf-H2C2_2 579..602 CDD:290200 11/22 (50%)
zf-C2H2 593..615 CDD:278523 9/21 (43%)
C2H2 Zn finger 595..615 CDD:275368 9/19 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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