DRSC/TRiP Functional Genomics Resources

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Protein Alignment mamo and bab2

DIOPT Version :9

Sequence 1:NP_572932.2 Gene:mamo / 32353 FlyBaseID:FBgn0267033 Length:1553 Species:Drosophila melanogaster
Sequence 2:NP_523879.2 Gene:bab2 / 44254 FlyBaseID:FBgn0025525 Length:1067 Species:Drosophila melanogaster


Alignment Length:1032 Identity:247/1032 - (23%)
Similarity:356/1032 - (34%) Gaps:339/1032 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 EHYCLRWNNYQSNLLGVFSQLLQDGSLVDVTLVCSEGTSIRAHKVVLSACSSYFQSLFLEHPEGH 68
            :.:|||||||||||..||.:|||..|.|||||.| ||.||:|||:||||||.|||:||.::|..|
  Fly   196 QQFCLRWNNYQSNLTNVFDELLQSESFVDVTLSC-EGHSIKAHKMVLSACSPYFQALFYDNPCQH 259

  Fly    69 LIVILKDVRFAELQTLVEFMYKGEVNVQYCQLSALLKTAESLKVKGLAEMT-------------- 119
            .|:|::||.:::|:.|||||||||:||...|::.|||.||:||::||||::              
  Fly   260 PIIIMRDVSWSDLKALVEFMYKGEINVCQDQINPLLKVAETLKIRGLAEVSAGRGEGGASALPMS 324

  Fly   120 -----NQNTTL--------REPEREPD--------RLRPQG------------------------ 139
                 ::...|        ::.:.:||        ||.|:|                        
  Fly   325 AFDDEDEEEELASATAILQQDGDADPDEEMKAKRPRLLPEGVLDLNQRQRKRSRDGSYATPSPSL 389

  Fly   140 -GG-------GSGGSAHKAADSPAAALDATAATQAATATATATAAAATSTST-SATSAAATAAAT 195
             ||       ||.|:..::...|.|         ..|:|......|:.:..| ...::|..|.|.
  Fly   390 QGGESEISERGSSGTPGQSQSQPLA---------MTTSTIVRNPFASPNPQTLEGRNSAMNAVAN 445

  Fly   196 AATSASTTATAAAGSSNTTTTTA--------ATTTA-------------------TCATAATSTA 233
            ...|.:.|||   |.||..:..|        |..:|                   ....||....
  Fly   446 QRKSPAPTAT---GHSNGNSGAAMHSPPGGVAVQSALPPHMAAIVPPPPSAMHHHAQQLAAQHQL 507

  Fly   234 ATSSSSSVTSAAAAAAAAASASGVAHSEEATSSSSSTGGQKREASDRSSPTPAKRSSRMHPAD-- 296
            |.|.:.:...|||||.|.|:.:|.|.|...:.:|:.|||.....|...:...:      |..|  
  Fly   508 AHSHAMASALAAAAAGAGAAGAGGAGSGSGSGASAPTGGTGVAGSGAGAAVGS------HHDDME 566

  Fly   297 -KVDVAE-DREQEQNQADE------------------LLSEELLGRNLKDEEDDDVDELDENEET 341
             |.::|| .||:|:.:..|                  .::.:.....|:.......:...:|...
  Fly   567 IKPEIAEMIREEERAKMIESGGHGGWMGAAAAATGAASVAADSYQYQLQSMWQKCWNTNQQNLVQ 631

  Fly   342 KLRGRDEDDDDEDEEEDTPMPLDLYQRPNVEPKSAAAATAAQQGGSNSLSGS------------S 394
            :||.|:..            ||..: ||  |..:.|..:..::|.|.|.:..            :
  Fly   632 QLRFRERG------------PLKSW-RP--EAMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYA 681

  Fly   395 NACHTNSSSNSNNNNNNNNNSSSNNN---------------------------NNTSSGKTSASS 432
            |..|.....:.:...:....:.....                           ....|....|:.
  Fly   682 NRVHNMLGPSLDGGADPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDMSAHQYANG 746

  Fly   433 NG-GTASSGGTADSVVAVDDDDDDDDGGHHHQRQVMDDRLEQDVDEEDLDDDVVVVGPATAMARG 496
            .| ||...|||..:             |:|.............:...|..      .|.::|...
  Fly   747 QGHGTYIGGGTTTN-------------GYHSAAAAKLAAQNAALAPPDAG------SPLSSMTET 792

  Fly   497 IAQRLAHQNLQRLHHTHHHAQHQHSQHHHPHSQHHHTP-HHQQHHTHSDDEDAMPVIAKSEILDD 560
            :.:::..|            |.||.|||...:.|...| ||||...|:...:    :.||..   
  Fly   793 LRRQILSQ------------QQQHQQHHQQQAHHQQQPSHHQQQSPHAQSMN----MYKSPA--- 838

  Fly   561 DYDDEMDLEDDDEADNSSNDLGLNMKMGSGGAGGGGGVDLSTGSTLIPSPLITLPSSSAAAAAAA 625
             |....::||                                             ..|||||.||
  Fly   839 -YLQRSEIED---------------------------------------------QVSAAAAVAA 857

  Fly   626 AAAMESQRSTPAMSAAQAAGAGASDLSIGGCGGRPASR--SSRDGGGNDGGRGGASSSSLLSPGT 688
            |||...|:     ...:.......|||..|..|.|...  .||   |:.||.|||:.:|..|   
  Fly   858 AAAKHQQQ-----QGERRGSENLPDLSALGLMGLPGLNVMPSR---GSGGGSGGAAPNSAAS--- 911

  Fly   689 VANLLPVQSVPLSLKKEIDCSEDDNSSHSRHMQQRSASAGGGLGGDLDYRASHESLLRNFSSPMS 753
                   .:..||.::|.|...:.....||....:|..:..|.|......||...   ..:||.|
  Fly   912 -------YARELSRERERDRERERERELSRQYGSQSRGSSSGSGSAKSLTASQRP---GAASPYS 966

  Fly   754 AM-----AASRCPTPFAFPFSPLGLSLFDIDPSRILSLLHHQTWLAEEALRTRGLLTAPKDFPHR 813
            |.     .||.....| ....|.|:.|                    ||. ..|||....:...|
  Fly   967 AAHYAKHQASAYNKRF-LESLPAGIDL--------------------EAF-ANGLLQKSVNKSPR 1009

  Fly   814 FTTLSDLLTKDYQPGAGQPMVTATA-----TATTASSTSQVSASRSGDTQYNKHAQQ 865
            |        :|:.||.||.|....|     .|..|::.:...|.|.......|..||
  Fly  1010 F--------EDFFPGPGQDMSELFANPDASAAAAAAAYAPPGAIRESPLMKIKLEQQ 1058

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mamoNP_572932.2 BTB 21..118 CDD:279045 58/96 (60%)
BTB 32..118 CDD:197585 52/85 (61%)
C2H2 Zn finger 1082..1105 CDD:275368
C2H2 Zn finger 1116..1137 CDD:275368
C2H2 Zn finger 1149..1169 CDD:275368
zf-C2H2 1469..1491 CDD:278523
C2H2 Zn finger 1471..1491 CDD:275368
zf-H2C2_2 1483..1506 CDD:290200
C2H2 Zn finger 1499..1519 CDD:275368
zf-H2C2_2 1511..1536 CDD:290200
C2H2 Zn finger 1527..1547 CDD:275368
bab2NP_523879.2 BTB 213..309 CDD:279045 58/96 (60%)
BTB 224..309 CDD:197585 52/85 (61%)
HTH_psq 645..690 CDD:283007 9/46 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447058
Domainoid 1 1.000 59 1.000 Domainoid score I10615
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
44.030

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