DRSC/TRiP Functional Genomics Resources

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Protein Alignment mamo and hinf-1

DIOPT Version :9

Sequence 1:NP_572932.2 Gene:mamo / 32353 FlyBaseID:FBgn0267033 Length:1553 Species:Drosophila melanogaster
Sequence 2:NP_493579.2 Gene:hinf-1 / 173348 WormBaseID:WBGene00009553 Length:541 Species:Caenorhabditis elegans


Alignment Length:377 Identity:82/377 - (21%)
Similarity:114/377 - (30%) Gaps:133/377 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly  1289 SATEPNISSSDGIHSTNKRSRLHHLETDPSYPHHHHHHHHHHHQQQHHQAQHQHHNPQSQLPTHL 1353
            |:..|...:|.||...:.|..|:    .|:.|.|||||||.|..|||........:..||     
 Worm    20 SSQHPPYYNSFGIAEPDPRHNLY----APTAPPHHHHHHHQHQPQQHLHYMIDSQDSDSQ----- 75

  Fly  1354 GHVSLPLVATSAAGSSSSAAAAAVVAAAQAQVSSGATGSGATGSGAPGS---------------- 1402
              .|:....|.|..||::..:.....|::|  ||..:.||.........                
 Worm    76 --DSVDSFRTPAPISSATRFSTHTPRASRA--SSNDSESGELSEEVMNHWLPMTWCERSSDDPQV 136

  Fly  1403 -------GNVGSAGSS------GAGGGISSLSS---------------------LTSLINAER-- 1431
                   |...|:.||      ...|.:|.:..                     |.|:....|  
 Worm   137 FTFVCLWGQCVSSSSSKDEFVDHLFGHVSVIEEGVQNGNHMNTVQCKVRGCNKHLDSIFQLHRHV 201

  Fly  1432 -----------------IPNEQFLGLNP----------QEASILNFL------------------ 1451
                             |..|.::|:..          .|..:||..                  
 Worm   202 SMHVFQADCQQKGSEALIEKEDYIGIESCGFEPCTNINYEGMLLNCQWEDCGMPFNSLTELFDHV 266

  Fly  1452 -----------RVDAAERQRDKRPATSRFACPF--CGKCVRSKENLKLHVRKHTGERPFVCLFCG 1503
                       |:.......||:..   |.|.:  |.:...||.||:.|.|.|:||:...|.||.
 Worm   267 GHHIDGVGDVDRIQQNFSNGDKKVV---FPCKWTACTQVADSKANLRRHARHHSGEKVLACPFCA 328

  Fly  1504 RAFGGKSDLTRHLRIHT-------GERPYHCESCGKCFARADYLSKHLTTHI 1548
            |.|..:..|..|....|       .|.||.|:.|.|.|.....|..|:|.|:
 Worm   329 RFFSRRDKLYDHCLRRTILMKNPEMEDPYLCKLCQKRFGTEKALCMHVTRHL 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mamoNP_572932.2 BTB 21..118 CDD:279045
BTB 32..118 CDD:197585
C2H2 Zn finger 1082..1105 CDD:275368
C2H2 Zn finger 1116..1137 CDD:275368
C2H2 Zn finger 1149..1169 CDD:275368
zf-C2H2 1469..1491 CDD:278523 9/23 (39%)
C2H2 Zn finger 1471..1491 CDD:275368 8/21 (38%)
zf-H2C2_2 1483..1506 CDD:290200 11/22 (50%)
C2H2 Zn finger 1499..1519 CDD:275368 7/19 (37%)
zf-H2C2_2 1511..1536 CDD:290200 10/31 (32%)
C2H2 Zn finger 1527..1547 CDD:275368 7/19 (37%)
hinf-1NP_493579.2 C2H2 Zn finger 299..316 CDD:275368 7/16 (44%)
C2H2 Zn finger 324..344 CDD:275368 7/19 (37%)
C2H2 Zn finger 359..379 CDD:275368 7/19 (37%)
C2H2 Zn finger 385..406 CDD:275368
C2H2 Zn finger 415..435 CDD:275368
C2H2 Zn finger 442..462 CDD:275368
C2H2 Zn finger 473..494 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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