DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mamo and Btbd18

DIOPT Version :9

Sequence 1:NP_572932.2 Gene:mamo / 32353 FlyBaseID:FBgn0267033 Length:1553 Species:Drosophila melanogaster
Sequence 2:XP_002729248.1 Gene:Btbd18 / 100363270 RGDID:2323370 Length:724 Species:Rattus norvegicus


Alignment Length:380 Identity:74/380 - (19%)
Similarity:130/380 - (34%) Gaps:88/380 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 QDGSLVDVTLVCSEGTSIRAHKVVLSACSSYF-QSLFLEHP-EGHLIVI-LKDVRFAELQTLVEF 87
            |.|...| .|:.:||.::.||..:|||||.:| :.|..|.| :|..:|: |..::...|:.||:|
  Rat    29 QSGVFCD-ALLQAEGEAVPAHCCILSACSPFFTERLERERPVQGRKVVLELGGLKIQTLRKLVDF 92

  Fly    88 MYKGEVNVQYCQLSALLKTAESLKVKGLAEMTNQNTTLREPEREPDRLRPQGGGGSGGSAHKAAD 152
            :|..|:.|...:...:|..|..|:|..|..:..:...|.:        .|||...:    .:...
  Rat    93 LYTSEMEVSQEEAQDVLSAARQLRVSELETLQLEGGKLVK--------APQGRRLN----RECLQ 145

  Fly   153 SPAAALDATAATQAATATATATAAAATSTSTSATSAAATAAATAATSASTTATAAAGSSNTTTTT 217
            .|:||..:.......:...|......|.:...|....:......|...|....|    .|.:.|.
  Rat   146 PPSAAPISARVVVPRSRPRTPLPVTQTPSPLGAVKLKSLGEEEGAHKKSNLPNA----DNLSDTL 206

  Fly   218 AATTTA-TCATAATSTAATSS-------------------------------------------- 237
            .....| .|.|...|::.:|.                                            
  Rat   207 LLKKKARVCLTQERSSSPSSQREGPKENKSNPGSTALPSLYPSVDEQLLPRKIRLSRSKPSPHVY 271

  Fly   238 SSSVTSAAAAAAAAASASGVAHSEEATSSSSSTGGQKREASD----RSSPTP---AKRSSRMHPA 295
            :|..:|..:..::..:|.|.....:.|.|.::.|..|::..:    :|:|.|   .|...:..|:
  Rat   272 TSKPSSMLSGPSSMPTAPGRRLWRQRTVSEATQGVDKQKPGEVSTLQSTPDPPDVGKTGGKKQPS 336

  Fly   296 DKVDVAEDREQEQNQADELLSEELLG------------RNLKDE----EDDDVDE 334
            .:.........|:.|...:...:::.            ||.:|.    |..|.||
  Rat   337 PESRAPASNSVEEGQVGRVKLRKIVNGTCWEVVQEPPIRNTQDSPQILESSDADE 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mamoNP_572932.2 BTB 21..118 CDD:279045 32/94 (34%)
BTB 32..118 CDD:197585 30/88 (34%)
C2H2 Zn finger 1082..1105 CDD:275368
C2H2 Zn finger 1116..1137 CDD:275368
C2H2 Zn finger 1149..1169 CDD:275368
zf-C2H2 1469..1491 CDD:278523
C2H2 Zn finger 1471..1491 CDD:275368
zf-H2C2_2 1483..1506 CDD:290200
C2H2 Zn finger 1499..1519 CDD:275368
zf-H2C2_2 1511..1536 CDD:290200
C2H2 Zn finger 1527..1547 CDD:275368
Btbd18XP_002729248.1 BTB 24..123 CDD:279045 32/94 (34%)
BTB 35..123 CDD:197585 30/88 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.