DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPdeam and AMD1

DIOPT Version :9

Sequence 1:NP_001285233.1 Gene:AMPdeam / 32352 FlyBaseID:FBgn0052626 Length:798 Species:Drosophila melanogaster
Sequence 2:NP_013677.1 Gene:AMD1 / 854973 SGDID:S000004498 Length:810 Species:Saccharomyces cerevisiae


Alignment Length:754 Identity:351/754 - (46%)
Similarity:469/754 - (62%) Gaps:99/754 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 YEVPQFPIEQIEKKLQIQRHLNEKQATGPRPVATAAVL-----ATNRESS---SSTEGRESAVTM 150
            |...|..:|...|:|.:..|.:.           :|:|     :||..||   :..:|.:||...
Yeast    73 YHENQQLLENGTKQLALDEHDSH-----------SAILEQPSHSTNCSSSNIAAMNKGHDSADHA 126

  Fly   151 ERND------------------------ADINFQRVSISGEDTSGVPLED-----LERASTLLI- 185
            .:|.                        |.:..::|..|.....|:..:|     |:..|:.|| 
Yeast   127 SQNSGGKPRTLSASAQHILPETLKSFAGAPVVNKQVRTSASYKMGMLADDASQQFLDDPSSELID 191

  Fly   186 ------EALRLRSHYMAMSDQ---------------------SFPSTTARFLKTVKLKDRINNLP 223
                  |...||:.|..:|.|                     |:.|.|    |||.   .:.|.|
Yeast   192 LYSKVAECRNLRAKYQTISVQNDDQNPKNKPGWVVYPPPPKPSYNSDT----KTVV---PVTNKP 249

  Fly   224 VKEVSDVHLRHSPMKITNP-WNVEFP-NDEDFKIKPLNGVFHIYENDDESSEIKYEYPDMSQFVN 286
            ..||.|......|.:  :| |  ||. ||:|         .::.....::.|:..:.|.:..:..
Yeast   250 DAEVFDFTKCEIPGE--DPDW--EFTLNDDD---------SYVVHRSGKTDELIAQIPTLRDYYL 301

  Fly   287 DMQVMCNMIADGPLKSFCYRRLCYLSSKYQMHVLLNELRELAAQKAVPHRDFYNTRKVDTHIHAA 351
            |::.|.::.:|||.|||.||||.||.:::.::.||||.:|.:..|..|||||||.||||||:|.:
Yeast   302 DLEKMISISSDGPAKSFAYRRLQYLEARWNLYYLLNEYQETSVSKRNPHRDFYNVRKVDTHVHHS 366

  Fly   352 SCMNQKHLLRFIKKTLKNNANEVVTVTNGQQMTLAQVFQSMNLTTYDLTVDMLDVHADRNTFHRF 416
            :||||||||||||..|:::.:|.|...:|:.:||.:||:|::||.|||::|.||:||.::|||||
Yeast   367 ACMNQKHLLRFIKHKLRHSKDEKVIFRDGKLLTLDEVFRSLHLTGYDLSIDTLDMHAHKDTFHRF 431

  Fly   417 DKFNSKYNPIGESRLREVFLKTDNYLNGKYFAQIIKEVAFDLEESKYQNAELRLSIYGKSPDEWY 481
            ||||.||||||||||||:||||:||:.|.|.|.|.|:|.||||.|||||.|.|:|:||:|.|||.
Yeast   432 DKFNLKYNPIGESRLREIFLKTNNYIKGTYLADITKQVIFDLENSKYQNCEYRISVYGRSLDEWD 496

  Fly   482 KLAKWAIDNDVYSSNIRWLIQIPRLFDIFKSNKMMKSFQEILNNIFLPLFEATARPSKHPELHRF 546
            |||.|.|||.|.|.|:|||:|||||:||:|...:::|||:|..|:|.||||.|..|..||:||.|
Yeast   497 KLASWVIDNKVISHNVRWLVQIPRLYDIYKKTGIVQSFQDICKNLFQPLFEVTKNPQSHPKLHVF 561

  Fly   547 LQYVIGFDSVDDESKPENPLFDNDVPRPEEWTYEENPPYAYYIYYMYANMTVLNKFRQSRNMNTF 611
            ||.||||||||||||.:. .|....|:|..|...:||||:||:||:|:|:..||::|..|..||.
Yeast   562 LQRVIGFDSVDDESKVDR-RFHRKYPKPSLWEAPQNPPYSYYLYYLYSNVASLNQWRAKRGFNTL 625

  Fly   612 VLRPHCGEAGPVQHLVCGFLMAENISHGLLLRKVPVLQYLYYLTQIGIAMSPLSNNSLFLNYHRN 676
            ||||||||||..:|||..:|:|..||||:||||||.:||||||.|:||||||||||:|||.|.:|
Yeast   626 VLRPHCGEAGDPEHLVSAYLLAHGISHGILLRKVPFVQYLYYLDQVGIAMSPLSNNALFLTYDKN 690

  Fly   677 PLPEYLARGLIISLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVMMSGFPHAIK 741
            |.|.|..|||.:||||||||||.:|:|||:||||:|||::|||:.||||||||||:.||:...||
Yeast   691 PFPRYFKRGLNVSLSTDDPLQFSYTREPLIEEYSVAAQIYKLSNVDMCELARNSVLQSGWEAQIK 755

  Fly   742 QQWLGPIYYEDGIMGNDITRTNVPEIRVAYRYETLLDEL 780
            :.|:|..:.:.|:.|||:.|||||:||:.|||:||..||
Yeast   756 KHWIGKDFDKSGVEGNDVVRTNVPDIRINYRYDTLSTEL 794

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPdeamNP_001285233.1 PLN03055 248..784 CDD:178613 304/534 (57%)
AMPD 284..780 CDD:238644 297/495 (60%)
AMD1NP_013677.1 AMPD 299..794 CDD:238644 297/495 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157341569
Domainoid 1 1.000 543 1.000 Domainoid score I35
eggNOG 1 0.900 - - E1_COG1816
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2979
Inparanoid 1 1.050 651 1.000 Inparanoid score I107
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54904
OrthoFinder 1 1.000 - - FOG0001065
OrthoInspector 1 1.000 - - oto100084
orthoMCL 1 0.900 - - OOG6_100681
Panther 1 1.100 - - LDO PTHR11359
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R55
SonicParanoid 1 1.000 - - X640
TreeFam 1 0.960 - -
1514.790

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