DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment jub and WLIM1

DIOPT Version :9

Sequence 1:	NP_572930.3	Gene:	jub / 32351	FlyBaseID:	FBgn0030530	Length:	728	Species:	Drosophila melanogaster
Sequence 2:	NP_172491.1	Gene:	WLIM1 / 837558	AraportID:	AT1G10200	Length:	190	Species:	Arabidopsis thaliana

Alignment Length:	183	Identity:	38/183 - (20%)
Similarity:	59/183 - (32%)	Gaps:	73/183 - (39%)

- Green bases have known domain annotations that are detailed below.

  Fly   574 FQQTAEKCAICG---HLIMEMILQAMGKSYHPGCFRCCVCNECL--------DGVPFTVDVDHKI 627
            |..|.:||..|.   :|:.:  |.|..:.||..||||..|...|        :||         :
plant     3 FAGTTQKCMACDKTVYLVDK--LTADNRVYHKACFRCHHCKGTLKLSNYNSFEGV---------L 56

  Fly   628 YCVNDYHRMF----------------------------------------APKCASCGKGITPVE 652
            ||...:.:.|                                        ..||..|.|.:.|:|
plant    57 YCRPHFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIE 121

  Fly   653 GTDETVRVVSMDKD-FHVDCYICEECGMQLTDEPDKRCYPLDGRLLCRGCHLQ 704
                   .||::.. :|..|:.|...|..::   .......:|:|.|:..|:|
plant   122 -------KVSVNGTLYHKSCFKCTHGGCTIS---PSNYIAHEGKLYCKHHHIQ 164

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
jub	NP_572930.3	LIM1_Ajuba_like	516..569	CDD:188738
		LIM2_Ajuba_like	581..633	CDD:188741	17/62 (27%)
		LIM3_Ajuba_like	641..702	CDD:188822	14/61 (23%)
WLIM1	NP_172491.1	LIM1_SF3	6..68	CDD:188824	20/72 (28%)
WLIM1	NP_172491.1	LIM2_SF3	110..170	CDD:188825	16/65 (25%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910