DRSC/TRiP Functional Genomics Resources

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Protein Alignment jub and Limch1

DIOPT Version :9

Sequence 1:NP_572930.3 Gene:jub / 32351 FlyBaseID:FBgn0030530 Length:728 Species:Drosophila melanogaster
Sequence 2:XP_036021493.1 Gene:Limch1 / 77569 MGIID:1924819 Length:1511 Species:Mus musculus


Alignment Length:674 Identity:131/674 - (19%)
Similarity:209/674 - (31%) Gaps:214/674 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 RSYQRSPGAIENYLQE---SQQQQQQHQMQQMQQLHHNQDYKLYERGNIIAASKY----ATPRP- 110
            ||.:.:.|.::.|::.   |:...::.:|.::.:..|:.:..:....|..:..||    :.|.| 
Mouse   888 RSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNVSSFPNDPSPMKYLRQQSLPPPK 952

  Fly   111 --------------VEQIQHTHNGS-AQIYAP-TAQILGQR--IAPQKHSPVYENLEFYGQFDSN 157
                          .|.|.....|| ::|..| |..:|..|  ..|:....|.:..:..|:...|
Mouse   953 FTATVETTIARTSVPESIASAGTGSPSKIITPNTVPMLTPRPYSQPKNSQEVLKTFKVDGKVSMN 1017

  Fly   158 HKRAQPQSPGSRQSAILNGYLLMQP----IRAGRF-----AH-TPVPENQGSASLGTT------- 205
            .:.|    ||..:.....|.....|    .::..|     .| :||...|||.|:...       
Mouse  1018 GEMA----PGDEEGKEKEGPAAAAPGPSLTKSQMFEGVATVHDSPVQVKQGSNSIEINIKKPNSA 1078

  Fly   206 ----RAAGGPPPPSGRSAALGP----TGDLEEHAA------------------------PIYENI 238
                .||......:|:....|.    |||||..:|                        |..:|.
Mouse  1079 PQELTAASEETESNGQEDEDGEERPGTGDLEPDSAEPQHFTTTVTRCSPTVALVEFSSNPQLKNE 1143

  Fly   239 IPHSGQR------------------AQPQASPATATM---YQEMQPTSNSSGSSSTAGLDLNALL 282
            :|..||:                  |:|::....||:   :.:..|.:|.               
Mouse  1144 VPEQGQKKPEDEMSGKVELVLSQKVAKPKSPEPEATLTFPFLDKMPETNQ--------------- 1193

  Fly   283 ASPMHQRSISSNTASSSSLGSPTQRYRNLSLPSHL---SPVPTAQSVAKLQQHTPVKSPGGAINV 344
               :|..:.||...|.||..||.      |.|...   .|....:...|.||..           
Mouse  1194 ---LHLPNPSSQADSPSSEKSPG------STPFKFWAWDPEEERRRQEKWQQEQ----------- 1238

  Fly   345 SVNPNYIEDINSSDYVCMTANLHRNTAAGLATGRAAATGAPAQRTVQE----------------- 392
                   |.:....|......|...             ...||:.|:|                 
Mouse  1239 -------ERLLQERYQKEQDKLKEE-------------WEKAQKEVEEEERRYYEEERKIIEDTV 1283

  Fly   393 -PPIITSSLAMGMATAAPPTTSNAPTSAAAAPAAPTSTASLR-ATPIAMT---APLAVATSPTPS 452
             |..|:||.|..::|:...|..:...:.......|......| .||....   :.|.......|.
Mouse  1284 VPFTISSSSADQLSTSLSVTEGSGTRNKMDLENCPDKENERRQKTPFQENDGDSLLKTREGGLPE 1348

  Fly   453 QGSTAVNAALKPRRGLTKNL-----------LPYSVTPPRPA-----------GPTEAQRKIEEL 495
            :.|...:.:..|...::|.:           .|:..|.|:||           .||.....::..
Mouse  1349 EQSLTPSPSANPEISVSKGIHQDPQLEAEAGAPHCGTNPQPAQDPPRNQQIPNPPTSTSEDVKPK 1413

  Fly   496 TRQLEEEI-EQSEEHGE----YFG--ICHTCGEKV-KGAGQACQAMGNLYHTNCFICCSC----G 548
            |..||:.| .|.|..||    ..|  :|.:||..: |||....:.:...:|..||.|..|    |
Mouse  1414 TLALEKTINHQMESPGERRKSISGKKLCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQLG 1478

  Fly   549 RALRGKAFYNVHGRVYCEEDYMYS 572
            .|:.|......:|.:.|.:.||.|
Mouse  1479 DAVSGTDVRIRNGLLNCTDCYMRS 1502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jubNP_572930.3 LIM1_Ajuba_like 516..569 CDD:188738 16/57 (28%)
LIM2_Ajuba_like 581..633 CDD:188741
LIM3_Ajuba_like 641..702 CDD:188822
Limch1XP_036021493.1 CH_LIMCH1 23..140 CDD:409127
DUF4757 250..>311 CDD:406382
DUF4757 <739..872 CDD:406382
GBP_C <1225..1262 CDD:419202 7/67 (10%)
LIM 1441..1498 CDD:214528 16/56 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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