DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment jub and prickle1

DIOPT Version :9

Sequence 1:NP_572930.3 Gene:jub / 32351 FlyBaseID:FBgn0030530 Length:728 Species:Drosophila melanogaster
Sequence 2:XP_012814522.1 Gene:prickle1 / 549693 XenbaseID:XB-GENE-486941 Length:871 Species:Xenopus tropicalis


Alignment Length:354 Identity:81/354 - (22%)
Similarity:135/354 - (38%) Gaps:82/354 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   412 TSNAPTSAAAAPAA------PTSTASLRATPIAMTAPLAVAT-----SPTPSQGS-------TAV 458
            |.|:|..:.::|.|      |.:|..:   |:.|...::..|     |.|....|       |.|
 Frog    13 TYNSPWKSVSSPRAIDELERPITTVYM---PLEMDQKISKHTFGCQRSSTSDDDSGCAMEEYTWV 74

  Fly   459 NAALKPRR------GLTKNLLPY--SV------------TPP----------------RPAGPTE 487
            ...|:|.:      .|.:..:||  ||            .||                :......
 Frog    75 PPGLRPEQVQLYFACLPEAKVPYVNSVGEKCRIKQLLYQLPPHDNEVRYCQSLSEEEKKELQMFS 139

  Fly   488 AQRKIEELTRQLEEEIEQSEEHGEYFGICHTCGEKVKGAGQAC----QAMGNLYHTNCFICCSCG 548
            ||||.|.|.|...:.:.::..|    .:|..||||:.|...|.    ...|..:|.:||:|.:|.
 Frog   140 AQRKKEALGRGNIKMLSRAVMH----AMCEKCGEKINGGEIAIFVSRAGPGVCWHPSCFVCSTCN 200

  Fly   549 RALRGKAFYNVHGRVYCEEDYMYSGFQQTAEKCAICGHLIM-EMILQAMGKSYHPGCFRCCVCNE 612
            ..|....::...|:::|...:.    :....:|:.|..:|. :...:|.|:.:|...|.|..|..
 Frog   201 ELLVDLIYFYQDGKIHCGRHHA----ELLKPRCSACDEIIFADECTEAEGRHWHMNHFSCYECET 261

  Fly   613 CLDGVPFTVDVDHKIYCVNDYHRMFAPKCASCGKGITPVEGTDETVRVVSMDKDFHV--DCYICE 675
            .|.|..:.:. |.:.:|...:...:|..|.|||:.|    |.|. .::....:.:|.  .|:.|.
 Frog   262 VLGGQRYIMK-DGRPFCCGCFESHYAEYCESCGEHI----GVDH-AQMTYDGQHWHATETCFSCA 320

  Fly   676 ECGMQLTDEPDKRCYPLDGRLLC-RGCHL 703
            :|.:.|...|   ..|..||:.| :.|.|
 Frog   321 QCKVSLLGCP---FLPKKGRIYCSKACSL 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jubNP_572930.3 LIM1_Ajuba_like 516..569 CDD:188738 16/56 (29%)
LIM2_Ajuba_like 581..633 CDD:188741 13/52 (25%)
LIM3_Ajuba_like 641..702 CDD:188822 17/63 (27%)
prickle1XP_012814522.1 PET_Prickle 60..156 CDD:193602 19/95 (20%)
LIM1_Prickle 164..222 CDD:188799 16/57 (28%)
LIM2_Prickle 227..282 CDD:188802 13/55 (24%)
LIM3_Prickle 287..345 CDD:188804 17/65 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.