Protein Alignment jub and Lmcd1

DIOPT Version :9

• Sequence 1: NP_572930.3
• Gene: jub / 32351
• FlyBaseID: FBgn0030530
• Length: 728
• Species: Drosophila melanogaster
• Sequence 2: NP_001008562.1
• Gene: Lmcd1 / 494021
• RGDID: 1308963
• Length: 365
• Species: Rattus norvegicus
• Alignment Length: 390
• Identity: 84/390 - (21%)
• Similarity: 124/390 - (31%)
• Gaps: 127/390 - (32%)

  Fly   356 SSDYVCMTANLHRNTAAG-------LATGRAAATGAPAQRTVQEPPIITSSLAMGMATAAPPTTS 413
            |.:..|::::|..:...|       .||..|...|....|..:...:|.::         |..|.
  Rat    53 SQEEHCLSSDLEDDRKIGRLLMDSKYATLTARVKGGDGIRIYKRNRMIMTN---------PIATG 108

  Fly   414 NAPTSAAAAPAAPTSTASLRATPIAMTAPLA---VATSPTPSQGSTAVNAALKPRRGLTKNLLPY 475
            ..||         ..|.:....|..:|..|.   :...|...|..|....||..||.|...|..|
  Rat   109 KDPT---------FDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGALYRRRQLMHQLPIY 164

  Fly   476 SVTPPRPAGPTEAQRK-IEELTRQLEEEIEQSEEHGEYFGICHTCGEKVKGAGQACQAMGNLYHT 539
            ...|.|..|..|.:.| :||..:|.:.|                    ..|.|:.
  Rat   165 DQDPSRCRGLVENELKAMEEFVKQYKSE--------------------ALGVGEV---------- 199

  Fly   540 NCFICCSCGRALRGKAFYNVHGRVYCEEDYMY---SGFQQTAEK---------------CAICGH 586
                      ||.|:      |.:..||:...   .|.:.||..               |.:|..
  Rat   200 ----------ALPGQ------GGLPKEENKTQEKPEGTETTAPTTNGSLGDPSKEVEYVCELCKG 248

  Fly   587 L------IMEMILQAMGKSYHPGCFRCCVCNECL--------DGVPFTVDVDHKIYCVNDYHRMF 637
            :      ::........|.:||.||.|..|:|.|        ||.|         :|...|....
  Rat   249 VAPADSPVVYADRAGYSKQWHPTCFLCIKCSEPLVDLIYFWKDGAP---------WCGRHYCESL 304

  Fly   638 APKCASCGKGITPVEGTDETVRVVSMDKDFHVDCYICEECGMQLTDEPDKRCYPL-DGRLLCRGC 701
            .|:|:.|.:.|.    :::..||  .|..:|...:|||.|...|:.    |.|.: .|:|||..|
  Rat   305 RPRCSGCDEIIF----SEDYQRV--EDLAWHRKHFICEGCEQLLSG----RAYIITKGQLLCPTC 359

  Fly   702  701
              Rat   360  359

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
jub	NP_572930.3	LIM1_Ajuba_like	516..569	CDD:188738	8/52 (15%)
		LIM2_Ajuba_like	581..633	CDD:188741	15/65 (23%)
		LIM3_Ajuba_like	641..702	CDD:188822	19/62 (31%)
Lmcd1	NP_001008562.1	PET_testin	116..203	CDD:193604	26/126 (21%)
		LIM1_Testin_like	243..300	CDD:188726	15/65 (23%)
		LIM	306..359	CDD:413332	19/62 (31%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1704
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900