DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment jub and pk

DIOPT Version :9

Sequence 1:NP_572930.3 Gene:jub / 32351 FlyBaseID:FBgn0030530 Length:728 Species:Drosophila melanogaster
Sequence 2:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster


Alignment Length:832 Identity:167/832 - (20%)
Similarity:276/832 - (33%) Gaps:248/832 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QRTQTQARNPGNS-DSDYETLMQRLHIG-------GGGGAGVGGGGGS--GGPGDGGVAMRSYQR 58
            ||.....:.|.|: |.:|:|:...|..|       ...|..:|....:  ||....|..:..:..
  Fly    80 QRLADANQEPDNARDREYDTVDCDLIAGQLDAVEDADDGIDLGDHSSTPKGGATTAGRPLFPHSS 144

  Fly    59 SPGAIENYLQESQQQQQQHQMQQMQQLHHNQDYKLYER--------------------GNIIAAS 103
            ||...:..|:..:...:..::.:......|:..::.:|                    |:::...
  Fly   145 SPRRSKKLLRSLRAHVRGEKLPKNDTTTANESSEVTQRNARVTVLDDPFLFGIDADHLGDLVVRG 209

  Fly   104 K-YATPRPVEQIQHTHNGSAQIYA---PTAQILGQRIAPQKHSPVYENLEFYGQFDSNHKRAQPQ 164
            | |:|      :..|.| .|:.||   .|||:| :.|..::.||..|          ..|.|.| 
  Fly   210 KRYST------LDATEN-MARFYAEQEATAQVL-EIIEQEEESPEQE----------APKPALP- 255

  Fly   165 SPGSRQSAILNGYLLMQPIRAGRFAHTPVPENQGSASLGTTRAAGGPPPPSGRSAALGP--TGDL 227
             |..:|         .:|:.    ...|.|.|:.:...||..||  |..|      |.|  .|||
  Fly   256 -PKQKQ---------QRPVP----PLPPPPANRVTQDQGTQPAA--PQVP------LQPLTAGDL 298

  Fly   228 EEHAAPIYENIIPHSGQ-------------RAQPQASPATATMYQEMQPTSNSSGSSSTAGLDLN 279
            :.....:.:..:|.|.:             .....|.|..||...:.:.....|.:..|....|.
  Fly   299 QFLNLSLRQRSLPRSMKPFKDAHDISFTFNELDTSAEPEVATGAAQQESNEPISRTPLTQISYLQ 363

  Fly   280 ALLASPMHQRSISSNTASSSSLGSPTQRYRNLSLP--SHLSPVPTAQSVAKL-----------QQ 331
            .:...|.|........|:..:|||     ..:.||  |..|.:..||:.|.:           ||
  Fly   364 KIPTLPRHFSPSGQGLATPPALGS-----GGMGLPSSSSASALYAAQAAAGILPTSPLPLQRHQQ 423

  Fly   332 HTPVKSPGGAINVSVNPNYIEDINSSDYVCMTANLHRNTAAGLATGRAAATGAP----------- 385
            :.|             |::.:              |.....|...|..||.|.|           
  Fly   424 YLP-------------PHHQQ--------------HPGAGMGPGPGSGAAAGPPLGPQYSPGCSA 461

  Fly   386 ----AQRTVQEPPIITSSLAMGMATAAPPTTSNAPTSAAAAPAAPTSTASLRATPIAMTAPLAVA 446
                :...:..||.....|:..::|.:||       |....||..||:||..| |......:.:.
  Fly   462 NPKYSNAQLPPPPHHHHQLSPALSTPSPP-------SLLHHPAGGTSSASAHA-PFLGGPHMDMQ 518

  Fly   447 TSPTPSQGS-------TAVNAALKPRR------GLTKNLLPYSVTPPRPAGPTEAQRKIEELTRQ 498
            ........|       |.|...|:|.:      .:..:.:||..:|..       |.::.:|..|
  Fly   519 RQSHSDDDSGCALEEYTWVPPGLRPDQVRLYFSQIPDDKVPYVNSPGE-------QYRVRQLLHQ 576

  Fly   499 LEEEIEQSEEHGEYFGICHTCGEKVK---------------GAGQACQAM--------------G 534
            |       ..|......||:..::.:               |.|...|.|              |
  Fly   577 L-------PPHDNEVRYCHSLTDEERKELRLFSTQRKRDALGRGNVRQLMSARPCDGCDDLISTG 634

  Fly   535 NL------------YHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYMYSGFQQTAEKCAICGHL 587
            ::            :|..||.|..|...|....:::..||:||...:.    :....:|:.|..:
  Fly   635 DIAVFATRLGPNASWHPACFACSVCRELLVDLIYFHRDGRMYCGRHHA----ETLKPRCSACDEI 695

  Fly   588 IM-EMILQAMGKSYHPGCFRCCVCNECLDGVPFTVDVDHKIYCVNDYHRMFAPKCASCGKGITPV 651
            |: :...:|.|:::|...|.|..|::.|.|..:.:. :.|.||::.:..|||..|..||:.|   
  Fly   696 ILADECTEAEGRAWHMNHFACHECDKQLGGQRYIMR-EGKPYCLHCFDAMFAEYCDYCGEAI--- 756

  Fly   652 EGTDETVRVVSMDKD---FHV--DCYICEECGMQLTDEPDKRCYPLDGRLLC 698
             |.|:.    .|..|   :|.  :|:.|..|...|.   .:...|..|.:.|
  Fly   757 -GVDQG----QMSHDGQHWHATDECFSCNTCRCSLL---GRAFLPRRGAIYC 800

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jubNP_572930.3 LIM1_Ajuba_like 516..569 CDD:188738 17/93 (18%)
LIM2_Ajuba_like 581..633 CDD:188741 14/52 (27%)
LIM3_Ajuba_like 641..702 CDD:188822 16/63 (25%)
pkNP_724538.1 PET_Prickle 523..618 CDD:193602 17/108 (16%)
LIM1_Prickle 624..682 CDD:188799 11/57 (19%)
LIM2_Prickle 687..742 CDD:188802 14/55 (25%)
LIM3_Prickle 747..805 CDD:188804 16/65 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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