DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment jub and stck

DIOPT Version :9

Sequence 1:	NP_572930.3	Gene:	jub / 32351	FlyBaseID:	FBgn0030530	Length:	728	Species:	Drosophila melanogaster
Sequence 2:	NP_731242.1	Gene:	stck / 40999	FlyBaseID:	FBgn0020249	Length:	348	Species:	Drosophila melanogaster

Alignment Length:	267	Identity:	63/267 - (23%)
Similarity:	101/267 - (37%)	Gaps:	95/267 - (35%)

- Green bases have known domain annotations that are detailed below.

  Fly   516 CHTCGEKVKGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDY--MYSGFQQTA 578
            |..|.:..:...:...:.|.|:||.||:|..|.|..:...||...||.|||.|:  ::      |
  Fly    21 CTRCADGFEPTEKIVNSNGELWHTQCFVCAQCFRPFQDGIFYEFEGRKYCERDFHVLF------A 79

  Fly   579 EKCAICGHLIMEMILQAMGKSYHPGCFRC------------------CVCNEC------------ 613
            ..|..||..::..:::||..|:||.||||                  .:|:||
  Fly    80 PCCNKCGEFVIGRVIKAMSASWHPQCFRCQLCAKELADCGFIKNQNRALCHECNAKVKAEITGRY 144

  Fly   614 --------LDGVP--FTVDVDH--------------------------------KIYCVNDYHRM 636
                    :|..|  |..:|.|                                ::||:..:.:|
  Fly   145 VCQKCHGLIDEEPLRFRGEVYHGYHFSCTACGTELDSTAREVKSRPGLAANDMNELYCLRCHDKM 209

  Fly   637 FAPKCASCGKGITPVEGTDETVRVVSMDKDFHVDCYICEECGMQLTDEP--DKRCYPLDGRLLCR 699
            ..|.|.:|.:   |:|   |.| |.::.|.:||:.::|.:|     ::|  ..|.|...|...|.
  Fly   210 GIPICGACRR---PIE---ERV-VTALGKHWHVEHFVCAKC-----EKPFLGHRHYEKRGLAYCE 262

  Fly   700 GCHLQRL 706
             .|..:|
  Fly   263 -THYHQL 268

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
jub	NP_572930.3	LIM1_Ajuba_like	516..569	CDD:188738	18/52 (35%)
		LIM2_Ajuba_like	581..633	CDD:188741	22/123 (18%)
		LIM3_Ajuba_like	641..702	CDD:188822	17/62 (27%)
stck	NP_731242.1	LIM1_PINCH	21..79	CDD:188717	19/63 (30%)
		LIM2_PINCH	82..133	CDD:188718	14/50 (28%)
		LIM3_PINCH	146..206	CDD:188719	7/59 (12%)
		LIM4_PINCH	212..265	CDD:188720	18/65 (28%)
		LIM5_PINCH	273..326	CDD:188721
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1704
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.810