DRSC/TRiP Functional Genomics Resources

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Protein Alignment jub and Wtip

DIOPT Version :9

Sequence 1:NP_572930.3 Gene:jub / 32351 FlyBaseID:FBgn0030530 Length:728 Species:Drosophila melanogaster
Sequence 2:XP_008757482.2 Gene:Wtip / 361552 RGDID:1306411 Length:397 Species:Rattus norvegicus


Alignment Length:368 Identity:187/368 - (50%)
Similarity:236/368 - (64%) Gaps:34/368 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   372 AGLATGRAAAT-GAPAQ-----RTVQE-PPIITSSLAMGMATAAPPTTSNAPTSAAAAPAAPTST 429
            |||....:..| |:|.:     |...| .|:.......|....|.|...:.|.....|..|.:..
  Rat    16 AGLGLRESEPTAGSPGRVRRGPRAADETAPVSGRRGKGGGGPEAAPDVPSRPERGPRASLAGSDG 80

  Fly   430 ASLRATPIAMTAPLAVATSPTPSQGSTAVN--AALKPR--RGLTKNLLPYSVTP-----PRPA-- 483
            .|.|::.|::.........|.|..|.:|.:  ::|..|  .|...:|||..|.|     |.||  
  Rat    81 GSARSSGISLGYDQRHGPGPGPPSGGSARSSVSSLGSRGSAGACADLLPPGVGPTPARSPEPAQF 145

  Fly   484 ---------------GPTEAQRKIEELTRQLEEEIEQSEEHGEYFGICHTCGEKVKGAGQACQAM 533
                           ||:.|:|::|.|||:||..:| :....:|||||..||..:.||.||||||
  Rat   146 PFPLPSLPLPPGREGGPSAAERRLEALTRELERALE-ARTARDYFGICIKCGLGIYGARQACQAM 209

  Fly   534 GNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYMYSGFQQTAEKCAICGHLIMEMILQAMGK 598
            |:||||:||||.||||.|||||||||..:|||:||::||||||||:||::||||||||||||:||
  Rat   210 GSLYHTDCFICDSCGRRLRGKAFYNVGEKVYCQEDFLYSGFQQTADKCSVCGHLIMEMILQALGK 274

  Fly   599 SYHPGCFRCCVCNECLDGVPFTVDVDHKIYCVNDYHRMFAPKCASCGKGITPVEGTDETVRVVSM 663
            |||||||||.|||||||||||||||::.||||.|||.:||||||||.:.|.|.:|.:.|:|||||
  Rat   275 SYHPGCFRCSVCNECLDGVPFTVDVENNIYCVRDYHTVFAPKCASCARPILPAQGCETTIRVVSM 339

  Fly   664 DKDFHVDCYICEECGMQLTDEPDKRCYPLDGRLLCRGCHLQRL 706
            |:|:||:||.||:|||||:.|..:|||||:|.||||.|||:||
  Rat   340 DRDYHVECYHCEDCGMQLSGEEGRRCYPLEGHLLCRRCHLRRL 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jubNP_572930.3 LIM1_Ajuba_like 516..569 CDD:188738 37/52 (71%)
LIM2_Ajuba_like 581..633 CDD:188741 43/51 (84%)
LIM3_Ajuba_like 641..702 CDD:188822 37/60 (62%)
WtipXP_008757482.2 PRK07003 <23..>185 CDD:235906 41/162 (25%)
LIM1_Ajuba_like 192..245 CDD:188738 37/52 (71%)
LIM2_Ajuba_like 257..309 CDD:188741 43/51 (84%)
LIM3_Ajuba_like 317..378 CDD:188822 37/60 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 113 1.000 Domainoid score I5995
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004196
OrthoInspector 1 1.000 - - otm45441
orthoMCL 1 0.900 - - OOG6_106886
Panther 1 1.100 - - O PTHR24219
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3625
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.910

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