Protein Alignment jub and Lims2

DIOPT Version :9

• Sequence 1: NP_572930.3
• Gene: jub / 32351
• FlyBaseID: FBgn0030530
• Length: 728
• Species: Drosophila melanogaster
• Sequence 2: XP_006254658.1
• Gene: Lims2 / 361303
• RGDID: 1305273
• Length: 341
• Species: Rattus norvegicus
• Alignment Length: 311
• Identity: 71/311 - (22%)
• Similarity: 115/311 - (36%)
• Gaps: 123/311 - (39%)

  Fly   515 ICHTCGEKVKGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYMYSGFQQT-A 578
            :|..|..:.....:...:.|.|||.:||:|..|.|......||...||.|||.|     ||.. |
  Rat    14 MCQRCQARFAPTERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHD-----FQMLFA 73

  Fly   579 EKCAICGHLIMEMILQAMGKSYHPGCFRC-----------------------C------------ 608
            ..|..||..::..:::||..::|||||||                       |
  Rat    74 PCCGFCGEFVIGRVIKAMNANWHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKF 138

  Fly   609 VCNEC---LDGVP--FTVDVDH----------------------KIYCVNDYHRMFAPKCASCGK 646
            :|..|   :|..|  |..|..|                      ::||:..:.:|..|.|.:|.:
  Rat   139 ICQRCHLAIDEQPLMFKNDPYHPDHFSCSHCGKELTSDARELKGELYCLPCHDKMGIPICGACRR 203

  Fly   647 GITPVEGTDETVRVV-SMDKDFHVDCYICEECGMQLTDEP-------DKR--------------- 688
               |:||     ||| ::.|.:||:.::|.:|     ::|       :|:
  Rat   204 ---PIEG-----RVVNALGKQWHVEHFVCAKC-----EKPFLGHRHYEKKGLAYCETHYNQLFGD 255

  Fly   689 -CY----PLDGRLL-------------CRGCHLQRLALQSSPHARHQEPVC 721
             ||    .::|.::             |..|:: :|.|::.......:|||
  Rat   256 VCYNCSHVIEGDVVSALSKAWCVNCFSCSACNM-KLTLKNKFVEFDMKPVC 305

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
jub	NP_572930.3	LIM1_Ajuba_like	516..569	CDD:188738	18/52 (35%)
		LIM2_Ajuba_like	581..633	CDD:188741	22/113 (19%)
		LIM3_Ajuba_like	641..702	CDD:188822	19/101 (19%)
Lims2	XP_006254658.1	LIM1_PINCH	15..73	CDD:188717	21/62 (34%)
		LIM2_PINCH	76..127	CDD:188718	12/50 (24%)
		LIM3_PINCH	140..190	CDD:188719	9/49 (18%)
		LIM4_PINCH	196..249	CDD:188720	16/65 (25%)
		LIM5_PINCH	257..310	CDD:188721	10/50 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1704
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.900