DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment jub and Limd1

DIOPT Version :9

Sequence 1:NP_572930.3 Gene:jub / 32351 FlyBaseID:FBgn0030530 Length:728 Species:Drosophila melanogaster
Sequence 2:NP_001106208.1 Gene:Limd1 / 316101 RGDID:1309830 Length:663 Species:Rattus norvegicus


Alignment Length:694 Identity:240/694 - (34%)
Similarity:341/694 - (49%) Gaps:139/694 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 QQQQQHQMQQMQQLHHNQDYKLYERGNIIAASKYATPRPVEQIQHTHNGSAQ--IYAPTAQILGQ 134
            |||||.|:.|.:.|.......:........:||.|.           :|:|:  :..||      
  Rat    58 QQQQQQQLLQEEALPRAGRSPINGGNRQGVSSKLAA-----------DGAAKPPLAVPT------ 105

  Fly   135 RIAPQKHSPVYENLEFYGQFDSNHKRAQPQSPGSRQSAILNGYLLMQPIRAGRFAHTPVPENQGS 199
             :||   ......:.....:....:|.:|.:.|:|                      |..:|.||
  Rat   106 -VAP---GLATTTMAVQSSYPPQEQRTRPSAHGAR----------------------PGSQNCGS 144

  Fly   200 ASLGTTRAAGGPPPPSGRSAALGPTGDLEEHA----APIYENI---IPHSGQRAQPQASPATATM 257
            ..          .|.|.:..||...|..|:.:    ...|:|.   .|..|.:  |:.||:.:..
  Rat   145 RE----------GPVSSQRPALHGLGPCEDPSCLTHGDYYDNFSLASPQWGDK--PEESPSMSLS 197

  Fly   258 YQEMQP--TSNSSGSSSTAGLDLNALLASPMH-QRSISSNTASSSSLGSPTQRYRNLSLPSHLSP 319
            .....|  ..|.|.|..:.| |     :.|.| |.|:.|..:..|...|        .:..|.|.
  Rat   198 VGSGWPGCPGNDSLSHRSCG-D-----SHPYHPQLSMCSGRSFESGQDS--------GIGGHSSE 248

  Fly   320 VPTAQ-------------SVAKLQQHTPVKSPGGAINVSVNPNYIEDINSSDYVCMTANLHRNTA 371
            .||..             |...|:..||.:..|..::..:.|:     ::|...|    |.|:::
  Rat   249 KPTGLWSTASSQRVNLGFSSTGLENGTPAQPKGTTVSAPMVPS-----STSQGAC----LRRDSS 304

  Fly   372 AGL-ATGRAAATGAPAQRTVQEPPIITSSLAMGMATAAPPTTSNAPTSAAA----------APAA 425
            .|. |.||........|..:|:.|  .|.|::....::..:..||.|...|          :..:
  Rat   305 LGYEAPGRVFKPLVDTQPWLQDGP--KSYLSVSAPLSSTTSKDNAQTGMTAGLDPKLGCVESGTS 367

  Fly   426 PTSTASLRATPIAMTAPLAVATSPTPSQGSTAVNAALKPRRGLTKNLLPYSVTPPR--------- 481
            |..:.:....|: |:||..::...:|...||  :::|.|       :||.|.||.|         
  Rat   368 PKPSPTSNVHPV-MSAPSELSCKESPPSWST--DSSLGP-------VLPESPTPSRVRLPCQTLT 422

  Fly   482 ---PAGPTEAQRKIEELTRQLEEEIEQSEEHGEYFGICHTCGEKVKGAGQACQAMGNLYHTNCFI 543
               ..||:.|:.|:|.||::||.|:: :....:|||.|..|.:.|.||||||||||:|||..||.
  Rat   423 PGPELGPSTAELKLEALTQRLEREMD-AHPKADYFGACVKCSKGVFGAGQACQAMGDLYHDACFT 486

  Fly   544 CCSCGRALRGKAFYNVHGRVYCEEDYMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCC 608
            |.:|.|.|||||||.|:|:|:||||::||||||:|::|.:||||||:|||||:|||||||||||.
  Rat   487 CAACSRKLRGKAFYFVNGKVFCEEDFLYSGFQQSADRCFLCGHLIMDMILQALGKSYHPGCFRCV 551

  Fly   609 VCNECLDGVPFTVDVDHKIYCVNDYHRMFAPKCASCGKGITPVEGTDETVRVVSMDKDFHVDCYI 673
            :|||||||||||||.::|||||.|||::.|||||:||..|.|.||:|||:||||||:|:||:||.
  Rat   552 ICNECLDGVPFTVDSENKIYCVRDYHKVLAPKCAACGLPILPPEGSDETIRVVSMDRDYHVECYH 616

  Fly   674 CEECGMQLTDEPDKRCYPLDGRLLCRGCHLQRLALQSSPHARHQ 717
            ||:||::|.||...|||||:..|.|..||::||....||.:.||
  Rat   617 CEDCGLELNDEDGHRCYPLEDHLFCHSCHVKRLEKGPSPASLHQ 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jubNP_572930.3 LIM1_Ajuba_like 516..569 CDD:188738 34/52 (65%)
LIM2_Ajuba_like 581..633 CDD:188741 41/51 (80%)
LIM3_Ajuba_like 641..702 CDD:188822 36/60 (60%)
Limd1NP_001106208.1 Mediates nuclear export. /evidence=ECO:0000250 54..128 17/90 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 74..99 5/35 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 117..158 12/72 (17%)
Interaction with EGLN1/PHD2. /evidence=ECO:0000250 180..251 20/86 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 230..253 7/30 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 267..297 7/34 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 335..416 20/90 (22%)
Interaction with RB1. /evidence=ECO:0000250 391..429 11/46 (24%)
Necessary for nuclear localization. /evidence=ECO:0000250 459..663 133/202 (66%)
LIM1_Ajuba_like 459..512 CDD:188738 34/52 (65%)
LIM2_Ajuba_like 524..576 CDD:188741 41/51 (80%)
LIM3_Ajuba_like 584..645 CDD:188822 36/60 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 103 1.000 Domainoid score I6613
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 352 1.000 Inparanoid score I2195
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004196
OrthoInspector 1 1.000 - - otm45441
orthoMCL 1 0.900 - - OOG6_106886
Panther 1 1.100 - - LDO PTHR24219
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3625
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.820

Return to query results.
Submit another query.