DRSC/TRiP Functional Genomics Resources

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Protein Alignment jub and Trip6

DIOPT Version :9

Sequence 1:NP_572930.3 Gene:jub / 32351 FlyBaseID:FBgn0030530 Length:728 Species:Drosophila melanogaster
Sequence 2:NP_035769.1 Gene:Trip6 / 22051 MGIID:1343458 Length:480 Species:Mus musculus


Alignment Length:474 Identity:152/474 - (32%)
Similarity:218/474 - (45%) Gaps:89/474 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   304 PTQRYRNLSLPSHLSPVPTAQSVAKLQQHTPVK----------SPGGA--------INVSVNPNY 350
            |::..:..|||......|||.. |.||.|..|.          .|.|.        :.....|..
Mouse    14 PSRLPQGRSLPRGALGPPTAHG-ATLQPHPRVNFCPLPPEHCYQPPGVPEDRGPTWVGSHGTPQR 77

  Fly   351 IEDINSSDYVCMTANLH------RNTAAGLATGRAAATGAPAQRTVQEPPIIT----SSLAMGMA 405
            ::.:.....:....:|.      .:..|.|..||:.|...|.::..:.||...    |....|.|
Mouse    78 LQGLPPDRGIIRPGSLDAEIDSLTSMLADLDGGRSHAPRRPDRQAFEAPPPHAYRGGSLKPSGGA 142

  Fly   406 TAAP---------PTTSNAPTSAAAAPAAPTSTASLRATPIAMTAPLAVATSPTPSQGSTAVNAA 461
            ...|         ||.::..|  |:.||.|       |.|:.:.....|.....|.:|::..:..
Mouse   143 VPTPMLPASHYGGPTPASYAT--ASTPAGP-------AFPVQVKVAQPVRGCGLPRRGASQASGP 198

  Fly   462 L----------------------KPRRGLTKNLLPYSVTPP---------RPAGP--TEAQRKIE 493
            |                      :|..|:.:.  |..|..|         .|.||  ...:.::|
Mouse   199 LPGPHFPLTGRGEVWGAGYRSHREPGPGVPEG--PSGVHIPAGGGRGGGHEPQGPLGQPPEEELE 261

  Fly   494 ELTRQLEEEIEQSEEHGEYFGICHTCGEKVKGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYN 558
            .||::|..::..... |||||.|..|||.|.|.|....|:..::|..||:|.:|...|||:.||.
Mouse   262 RLTKKLVHDMSHPPS-GEYFGRCGGCGEDVVGDGAGVVALDRVFHIGCFVCSTCRAQLRGQHFYA 325

  Fly   559 VHGRVYCEEDYMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCVCNECLDGVPFTVDV 623
            |..|.|||..|:     .|.|||:.|...|::.||:||||:||||||.|.||:..|||:|||||.
Mouse   326 VERRAYCESCYV-----ATLEKCSTCSEPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDA 385

  Fly   624 DHKIYCVNDYHRMFAPKCASCGKGITPVEGTDETVRVVSMDKDFHVDCYICEECGMQLTDEPD-K 687
            ..:|:|:.|:||.|||:|:.||..|.|..|.:||||:|::|:.||:.||.|||||:.|:.|.: :
Mouse   386 TSQIHCIEDFHRKFAPRCSVCGGAIMPEPGQEETVRIVALDRSFHIGCYKCEECGLLLSSEGECQ 450

  Fly   688 RCYPLDGRLLCRGCHLQRL 706
            .||||||.:||:.|...|:
Mouse   451 GCYPLDGHILCKACSAWRI 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jubNP_572930.3 LIM1_Ajuba_like 516..569 CDD:188738 23/52 (44%)
LIM2_Ajuba_like 581..633 CDD:188741 28/51 (55%)
LIM3_Ajuba_like 641..702 CDD:188822 31/61 (51%)
Trip6NP_035769.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..43 11/29 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 57..84 3/26 (12%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 107..134 7/26 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 218..257 8/40 (20%)
LIM1_TRIP6 283..336 CDD:188736 23/52 (44%)
LIM 343..402 CDD:295319 33/58 (57%)
LIM3_Zyxin_like 403..465 CDD:188743 31/61 (51%)
Interaction with MAGI1 and PTPN13. /evidence=ECO:0000250 473..480
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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