DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup93-1 and Nup93

DIOPT Version :9

Sequence 1:NP_572929.1 Gene:Nup93-1 / 32350 FlyBaseID:FBgn0027537 Length:823 Species:Drosophila melanogaster
Sequence 2:NP_001011925.1 Gene:Nup93 / 291874 RGDID:1311525 Length:819 Species:Rattus norvegicus


Alignment Length:838 Identity:289/838 - (34%)
Similarity:461/838 - (55%) Gaps:45/838 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ELLKQAQRLTNETNTDTEVPGVERTMSQVLQATKEFHSRV---TQMGTNDLQAHILLGSKGVDLP 66
            |||:||::|..||...:|:|.|||.:.::.||.:...||.   |...|.|::|.:||||:|:|:.
  Rat     8 ELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLGSRGLDIS 72

  Fly    67 KLTQKLESLSARQTFEPIDPVTETNVQAYLKNERENAILSVIDETNRSIFKSVERQKWRCIYSEW 131
            .::|:||||||..||||::||.:|::|.:||||::||:||.|:|:.:..|...|......:..||
  Rat    73 HISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYHRESMLVEW 137

  Fly   132 GEEKEALLNALVGPNQQDFPDVQFQIVPTAMAD-EPTPYSQLNGHEQMYAEQIAIHNQSIILGR- 194
            .:.|:.:|:.|:. :.:|..|...:..|:.::| .|...|.|:..|..||.||.|:|:.|:.|. 
  Rat   138 EQVKQRILHTLLA-SGEDALDFTQESEPSYVSDVSPPGRSSLDSIEMAYARQIYIYNEKIVSGHL 201

  Fly   195 RPNLLSTLAHVVQDSFNDESVAEMWNVLQFMT--ALPPVSSTIDPIKNR---QTSPQFVEQARTY 254
            :|||:...|.|.:  .:|:|:::||.:::.||  .|.|.:   |.:|:|   :....||:||..|
  Rat   202 QPNLVDLCASVAE--LDDKSISDMWAMVKQMTDVVLTPAT---DALKSRSSVEVRMDFVKQALGY 261

  Fly   255 LERRYRTYMRKFIVANLAKARRGGIPSVYHMVRSYVGVTLQGQRALYGLHDVN-NGQPLWPHVYY 318
            ||:.|:.|....:..||.:|:.||:|..|.:|||::.:.|.....  ||.|.. .|.|:|..:||
  Rat   262 LEQSYKNYTLVTVFGNLHQAQLGGVPGTYQLVRSFLNIKLPAPSP--GLQDGEVEGHPVWALIYY 324

  Fly   319 SLRSGDMDAAA-LYLKESGTCPDLLTLLTLRKNGDRDNLMVKLEGQLKLEYNSRLRACTDPYKKA 382
            .:|.||:.||: :..:......:..|......|.....|....|.:|:|.|...||..|||||:|
  Rat   325 CMRCGDLLAASQVVSRAQHQLGEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRA 389

  Fly   383 VYVVLLACDPHFTHVELMRSIDDFLWMQLS-ILRRSDQSDSNTEQLTFSGLQSLILEKYGENYFN 446
            ||.::..||......|:....:|:||::|: :....|.:.|..::||.|..|..:||.|||::|.
  Rat   390 VYCIIGRCDITDNQSEVADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFT 454

  Fly   447 AREKAALYFQVLTLTGQFEAAIEFLARTEKNRTHAIHMAIALNEISMLGTPRSVEQSLLSSDPDD 511
            ..::..||||||.||.||||||.||.|.|:.|.||:|:|:.|.|:.:|.........|||.:|.|
  Rat   455 VNQQPFLYFQVLFLTAQFEAAIAFLFRMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGD 519

  Fly   512 PKPMKRLNLVRLIVMYTKCFERTDTTQALHYYYLLRNFKSENGRGNVMLTCVCDLLVEKCDDEML 576
            |..|:|||.|||:::||:.||.||..:||.|:|.||:.|...|. |:.|.||.:|::|..:   .
  Rat   520 PPCMRRLNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGE-NMFLRCVSELVIESRE---F 580

  Fly   577 ELIFGTEDKKNGLRYGGIYAEFQIHECDKYSLAEMVGDELSKRGDYELAIELYFIGGQLDKALRL 641
            ::|.| :.:.:|.|..|:..:|   ..|...:...|......:|.:|.|.:||.:....||.|.|
  Rat   581 DMILG-KLENDGSRKPGVIDKF---TSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLEL 641

  Fly   642 VNSLLAQVVHQPTQNGSVRNRLGDIINRLDAALVVRKSDVEVQVVV--TYTVLTKVMKFFDHYHE 704
            :|.||:.||.|.:...|.:.||.::  .|..|...|...:.....|  |:.:|..::.|||.||.
  Rat   642 MNKLLSPVVPQISAPQSNKERLKNM--ALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHS 704

  Fly   705 GALRSALEILTNNHLIPASSLEVDECVTNIKRMGPEVIKVLPDILLASMDIVYQEYVKLMDSNET 769
            |.:..|.:|:....|:|.:...::|.|...:....|:...|.::|||:|:|::.::.:|..::  
  Rat   705 GHIDRAFDIIDRLKLVPLNQESMEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKGTS-- 767

  Fly   770 ASGFFDESKCVNKEPAVK----HLRDRAKAFTNMAASVPYRMPSTTNQRLVQLEILMH 823
                  .|.....:..::    .||.:|:|....|..:|||....||.||||:|:||:
  Rat   768 ------PSSATRPQRVIEDRDSQLRSQARALITFAGMIPYRTSGDTNARLVQMEVLMN 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup93-1NP_572929.1 Nic96 215..808 CDD:309288 198/606 (33%)
Nup93NP_001011925.1 Nic96 220..802 CDD:282017 196/604 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166348858
Domainoid 1 1.000 324 1.000 Domainoid score I1166
eggNOG 1 0.900 - - E1_KOG2168
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 476 1.000 Inparanoid score I1426
OMA 1 1.010 - - QHG59183
OrthoDB 1 1.010 - - D187731at2759
OrthoFinder 1 1.000 - - FOG0002723
OrthoInspector 1 1.000 - - otm44495
orthoMCL 1 0.900 - - OOG6_103333
Panther 1 1.100 - - O PTHR11225
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3522
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.770

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