DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgB and Lpin3

DIOPT Version :9

Sequence 1:NP_001259535.1 Gene:rdgB / 32340 FlyBaseID:FBgn0003218 Length:1297 Species:Drosophila melanogaster
Sequence 2:NP_001186047.1 Gene:Lpin3 / 64899 MGIID:1891342 Length:848 Species:Mus musculus


Alignment Length:982 Identity:176/982 - (17%)
Similarity:296/982 - (30%) Gaps:385/982 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   366 KFGSKGALHSPVGSAHSFDLQSKKPHAKTAPRRHVANWRMERLEVD---SKSNSDEEFF-DCLDT 426
            :||..|.|.|                     |..|.:..:....||   ...:|.|.|| ..||:
Mouse    51 RFGKLGVLRS---------------------REKVVDIEINGEPVDLHMKLGDSGEAFFVQELDS 94

  Fly   427 NETNSLAKWSSLELLGEGDDSPP-------PHGGPSSAASVGGRGNSRQEDSIFNQDFLMRVASE 484
            :|                :|.||       |.||.|...|....|.:.:.:.:.   ...|....
Mouse    95 DE----------------EDVPPRLCTSPIPWGGLSGFPSDSQIGTASEPEGLV---ITGRRKRR 140

  Fly   485 RGNKRQLRSSASVDRSHDSSPPGSPS--------TPSCPTTILILVVHAGSVLDAASELTAKKSD 541
            |..|.:.|...:||.|.:....|:.|        ||..|:.            ..|.|.:::..|
Mouse   141 RRRKPRRREEDAVDSSSEELEAGAESELTLLEKPTPESPSA------------QEAEEPSSQPKD 193

  Fly   542 VTTFRGSFEAVMRQHYPSLLTHVTIKMVPCPSICTDALGILSS--LSPYSFDASPSAADIPNIAD 604
            :..:                         ....||....:.|.  :||    .|.|..::.::..
Mouse   194 IHPY-------------------------SDGECTPQANLSSGDLMSP----KSDSELELRSLEP 229

  Fly   605 VPI----------GAIPLLSVAS-PEFHETVNKTVAAANIVYHEFLKSEEGHGFSGQIVMLGDSM 658
            .|:          |.:|.::.|. |||.                               ::.:||
Mouse   230 SPLRAESHMQWVWGRLPKVAKAERPEFS-------------------------------LILESM 263

  Fly   659 GSLLAYEALCRSNGSQPGTASGASNSGGDAATNINTHNPLSPRNSRLDDDERFIEADLDAKRL-- 721
            .     ||:| :...:|..:|..|.:|.|..:     .|:.....|.|.....:||..:...:  
Mouse   264 A-----EAIC-ALPEEPSPSSSPSEAGVDTLS-----PPVLHPGVRADTFHPAVEAHCEETAVDS 317

  Fly   722 -LVAPSPRRRRSSSSSDS---RATKLDFEVCDFFMFGSPLSVVLAAR-KLHDAKAALPRPNCHQV 781
             |.||..:..::.:|..:   .|||       .:.:.:|.|...:.. ::...|.:|.| |.|  
Mouse   318 PLAAPESKETKTQNSRGAGHPPATK-------SWSWTTPESHTPSGHPQVSRGKGSLKR-NQH-- 372

  Fly   782 YNLFHPTDPIASRLEPLLSARFSILAPVNVPRYAKYPLG--------------NGQPLHLLEV-- 830
               ..|:|.....|..|.|...::..|     .::|.:|              :..|.|:.|.  
Mouse   373 ---LGPSDIYLDDLPSLDSENVALYFP-----KSEYGMGARRWSEPSNQKLLESPNPEHIAECTL 429

  Fly   831 ---------------------IQSHPQHFNDGNNLLAGRRLSD------------------ASMQ 856
                                 ::...||.....:|.....|.|                  |.|.
Mouse   430 DSVDKIELSLCGGLADNRDISLEKFTQHMVSYEDLTKNPGLLDDPNLVVKINEKHYNWAVAAPMI 494

  Fly   857 STISGLIENVSLSTIHALQ--------NKWW-GTKRLDYALYCPEGLSNFPAHALPHLFHASYWE 912
            .::....:|:..||:..|:        .:|| ..:|.|           |||..     |:|..|
Mouse   495 LSLQAFQKNLPESTVDKLEKEKMPRKGGRWWFSWRRRD-----------FPAEE-----HSSQRE 543

  Fly   913 SPDVIAFILRQIGKFEGIPFVGSNDDKDNA----------SFHPGQ-PREKWIKKRTSVKLKNVA 966
            .    |...:|.|  |....:.|:||..::          |..||. |..|...:.:|.:::.:.
Mouse   544 K----AATRKQQG--EKTEVLSSDDDVPDSPVILEVPPLPSSTPGYVPTYKKSLRLSSDQIRCLN 602

  Fly   967 ANHRANDVIVQEGREQRLNARFMYGPLDMITLHGEKVDVHIMKDPPAGEWTFLSTEVTDKNGRIS 1031
            .|..||||:.....:.:...|.             |..:::        |.:             
Mouse   603 LNEGANDVVFSVTTQYQGTCRC-------------KATIYL--------WNW------------- 633

  Fly  1032 YSIPDQVSLGYGIYPVKMVVRGDHTSVDCYMAVVPPLTECVVFSIDGSFTAS------MSVTGRD 1090
               .|:|                                 |:..|||:.|.|      :...|:|
Mouse   634 ---DDKV---------------------------------VISDIDGTITKSDALGHILPQLGKD 662

  Fly  1091 PKVRAGAVDVCRHWQELGYLLIYIT----GRPDMQQQRVVSWLSQH--NFPHGLISFA------- 1142
             ....|...:.......||..:|.:    |..|: .:..:.|:|:|  ..|.|.|..:       
Mouse   663 -WTHQGITSLYHKIHLNGYKFLYCSARAIGMADL-TKGYLQWVSEHGCGLPKGPILLSPSSLFSA 725

  Fly  1143 ---DGLSTDPLGHKTAYLNNLVQ--------NHGISITAAYGS-SKDISVYTNVGMRTDQIFIVG 1195
               :.:...|...|.|.|:::.|        .|     ||:|: ..|:..|..||:...:||.|.
Mouse   726 LHREVIEKKPEVFKVACLSDIQQLFLPQRQPFH-----AAFGNRPNDVFAYRQVGLPESRIFTVN 785

  Fly  1196 KVGKKLQ 1202
            ..|:.:|
Mouse   786 PRGELIQ 792

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgBNP_001259535.1 SRPBCC_PITPNM1-2_like 1..268 CDD:176898
DDHD 746..924 CDD:280937 40/242 (17%)
LNS2 1072..1203 CDD:197870 38/162 (23%)
Lpin3NP_001186047.1 SMP2 1..816 CDD:227415 176/982 (18%)
N-LIP. /evidence=ECO:0000250 1..108 19/93 (20%)
Lipin_N 1..106 CDD:282436 19/91 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 97..233 32/179 (18%)
Nuclear localization signal. /evidence=ECO:0000255 135..144 2/8 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 271..298 6/31 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 314..373 14/71 (20%)
Lipin_mid 435..525 CDD:293481 11/89 (12%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 536..568 10/42 (24%)
C-LIP. /evidence=ECO:0000250 587..789 48/278 (17%)
LNS2 589..814 CDD:285447 49/281 (17%)
DXDXT motif 641..645 2/3 (67%)
LXXIL motif 652..656 0/3 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5083
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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