DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgB and pitpnaa

DIOPT Version :10

Sequence 1:NP_001259535.1 Gene:rdgB / 32340 FlyBaseID:FBgn0003218 Length:1297 Species:Drosophila melanogaster
Sequence 2:NP_957229.1 Gene:pitpnaa / 393909 ZFINID:ZDB-GENE-040426-744 Length:271 Species:Danio rerio


Alignment Length:267 Identity:117/267 - (43%)
Similarity:164/267 - (61%) Gaps:13/267 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLIKEYRIPLPLTVEEYRIAQLYMIAKKSREESHGEGSGVEIIINEPYKDGPGGNGQYTKKIYHV 65
            |||||:||.||::||||::.|||.:|:.|:.|: |.|.|||::.||||:...|..||||.|||.:
Zfish     1 MLIKEFRIVLPVSVEEYQVGQLYSVAEASKNET-GGGDGVEVLKNEPYEKEDGEKGQYTHKIYRL 64

  Fly    66 GNHLPGWIKSLLPKSALTVEEEAWNAYPYTRTRYTCPFV-EKFSLDIETYYYPDNGYQDNVFQLS 129
            .:.:|.:::.|.|.|||.:.|:|||||||.||..|..:: :.|.:.|||::.||.|.|:||..|.
Zfish    65 QSKVPSFVRLLAPSSALIIHEKAWNAYPYCRTVLTNEYMKDNFLIMIETWHKPDLGEQENVHNLD 129

  Fly   130 GSDLRNRIVDVIDIV-KDQLWGGDYVKEEDPKHFVSDKTGRGPLAEDWLEEYWREVKGKKQPTPR 193
            ....:...|..|||. :.|:...||..:|||..|.|.|||||||..||.:|.         |..:
Zfish   130 SERWKQVEVIHIDIADRSQVDTKDYKPDEDPATFKSQKTGRGPLGPDWKKEL---------PQKK 185

  Fly   194 NMSLMTAYKICRVEFRYWGMQTKLEKFIHDVALRKMMLRAHRQAWAWQDEWFGLTIEDIRELERQ 258
            :...|.|||:..|.|:::|:|.|:|.|||... :::....|||.:.|.|.|..||:||||.:|.:
Zfish   186 DCPHMCAYKLVTVNFKWFGLQKKVEGFIHRQE-KRLFTSFHRQLFCWLDRWIDLTMEDIRRMEEE 249

  Fly   259 TQLALAK 265
            ||..|.|
Zfish   250 TQKELDK 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgBNP_001259535.1 SRPBCC_PITPNM1-2_like 1..268 CDD:176898 117/267 (44%)
DDHD 743..924 CDD:460725
LNS2 1072..1203 CDD:197870
pitpnaaNP_957229.1 SRPBCC_PITPNA-B_like 2..259 CDD:176897 116/266 (44%)
Blue background indicates that the domain is not in the aligned region.

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