DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgB and rdgBbeta

DIOPT Version :10

Sequence 1:NP_001259535.1 Gene:rdgB / 32340 FlyBaseID:FBgn0003218 Length:1297 Species:Drosophila melanogaster
Sequence 2:XP_061504253.1 Gene:rdgBbeta / 3291020 VectorBaseID:AGAMI1_010884 Length:268 Species:Anopheles gambiae


Alignment Length:267 Identity:117/267 - (43%)
Similarity:159/267 - (59%) Gaps:17/267 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLIKEYRIPLPLTVEEYRIAQLYMIAKKSREESHGEGSGVEIIINEPYKDGPGGNGQYTKKIYHV 65
            :|||||||.:|||||||:|.||||||:.|.|:| .:|.|||:|.|:...|...|.||||:|..|:
Mosquito     2 VLIKEYRICMPLTVEEYKIGQLYMIARHSLEQS-DDGEGVEVIENKECFDPEHGKGQYTEKRIHL 65

  Fly    66 GNHLPGWIKSLLPKSALTVEEEAWNAYPYTRTRYTCPFVEKFSLDIETYYYPDNGYQDNVFQLSG 130
            .:.||.|::::.|| ...|.|:.||.||||.|.|||.|:.|..:.|.|.:..:.|..:|...|..
Mosquito    66 SSRLPYWLQAVCPK-VFYVIEKGWNYYPYTVTEYTCSFIPKLHIRILTRFEDNAGTSENCLNLPE 129

  Fly   131 SDLRNRIVDVIDIVKDQLWGGDYVKEEDPKHFVSDKTGRGPLAEDWLEEYWREVKGKKQPTPRNM 195
            ..|.|||||.:||..::.....|.||||||.|.|..||||||.|.|          ::...|   
Mosquito   130 ETLANRIVDHVDIAFEEPSEKHYKKEEDPKFFKSRITGRGPLVEGW----------RQTDEP--- 181

  Fly   196 SLMTAYKICRVEFRYWGMQTKLEKFIHDVALRKMMLRAHRQAWAWQDEWFGLTIEDIRELERQTQ 260
             :|.:||:....|..||:||::|.||.. .:|.::|..||||:||.|||.|::|:|:|..|:..|
Mosquito   182 -MMCSYKLVEASFEVWGLQTRVEDFIQK-CIRDVLLLGHRQAFAWIDEWHGMSIDDVRMYEKDKQ 244

  Fly   261 LALAKKM 267
            .....|:
Mosquito   245 TEANDKL 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgBNP_001259535.1 SRPBCC_PITPNM1-2_like 1..268 CDD:176898 117/267 (44%)
DDHD 743..924 CDD:460725
LNS2 1072..1203 CDD:197870
rdgBbetaXP_061504253.1 None
Blue background indicates that the domain is not in the aligned region.

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