DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgB and SPAC20G8.02

DIOPT Version :9

Sequence 1:NP_001259535.1 Gene:rdgB / 32340 FlyBaseID:FBgn0003218 Length:1297 Species:Drosophila melanogaster
Sequence 2:NP_593319.1 Gene:SPAC20G8.02 / 2541976 PomBaseID:SPAC20G8.02 Length:757 Species:Schizosaccharomyces pombe


Alignment Length:617 Identity:124/617 - (20%)
Similarity:213/617 - (34%) Gaps:232/617 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   400 VANWRMERLEVDSKSNSDEEFFDCLDTNETNSLAKWSSLELLGEGDDSPPPHGGPSSAASVGGRG 464
            |..:.::.||.:||.::.      :.|.|.      :|..||.:..| |..:..||:..|.    
pombe   280 VRGYELDMLESNSKPSTP------VPTEEL------TSTTLLNDSSD-PSDNFTPSNTEST---- 327

  Fly   465 NSRQEDSIFNQDFLMRVASERGNKRQLRSSASVDRSHDSSPPGSPSTPSCPTTILILVVHA-GSV 528
                                      :...::.|.||      ..|.|......|||..|. |..
pombe   328 --------------------------IDLPSATDASH------LMSRPDREVNHLILCCHGIGQK 360

  Fly   529 LDAASELTAKKSDVTTFRGSFEAV------MRQHYPS------------LLTHVTIKM------- 568
            :....|..:...|::.||.:.:..      ::..||.            ||....|:.       
pombe   361 MGERVETVSFVKDISNFRKTLKKTFNSSPDLQAVYPKLKGGGNGVQCLPLLWRQDIRFGMARDLD 425

  Fly   569 -------------------VPCPSICTDALGILSSLSPYSFDASPSAADIPN-IADVPIGAIPLL 613
                               :....:..|::..|.:::      .|:...:.| |:||   .:.:|
pombe   426 SSFADDDDDDDESLNMSRDLALDDLEDDSIPTLDNIN------IPTVTGLRNIISDV---LLDVL 481

  Fly   614 SVASPEFHETVNKTVAAA----NIVYHEFLKSEEGHGFSGQIVMLGDSMGSLLAYEALCRSNGSQ 674
            ....|.:.:   |.:||.    |.:|:.:.|:..  .|:|.:.:||.|:|:|:.:: :.|..|  
pombe   482 LYCQPNYRD---KILAAVVKRLNRLYNLYKKNVP--SFNGHVSLLGHSLGALILFD-IIRYQG-- 538

  Fly   675 PGTASGASNSGGDAATNINTHNPLSPRNSRLDDDERFIEADLDAKRLLVAPSPRRRRSSSSSDSR 739
                            ||        :.|:|                                  
pombe   539 ----------------NI--------KYSKL---------------------------------- 545

  Fly   740 ATKLDFEVCDFFMFGSPLSVVLAARKLHDAKAALPRP----------------------NCHQVY 782
              :|||.|.:||..||||.:.   :.|:..|.|.|.|                      :|...|
pombe   546 --QLDFPVANFFALGSPLGLF---QMLNGKKIAGPIPKTNLTRSLSYSEQSFDSGVSILSCQNFY 605

  Fly   783 NLFHPTDPIASRLEPLLSARFSILAPVNVPRYAKYP------LGN---GQPLHLLEVIQSHPQHF 838
            |:|||||||:.|:|||:..:.:.|.|..:..:..:.      :|:   |..|::|..::|     
pombe   606 NIFHPTDPISYRVEPLVVKQMARLKPQKISHFRPHQDLSSSGVGHKIAGGALNVLSGLRS----- 665

  Fly   839 NDGNNLLAGRRLSDASM--QSTISGLIENVSLSTIHALQ--------NKWWGTKRLDYALYCPEG 893
            ...|.|:. :.||.||:  ::|.....|:.....|....        ||   |.|:|:.|  .||
pombe   666 GIANTLIL-KSLSYASVFNEATADSHDESQGAENIRDWHIDERMYRLNK---TGRIDFML--QEG 724

  Fly   894 -LSNFPAHALPHLFHASYWESPDVIAFILRQI 924
             |....::......|:.||::.|:..|||.|:
pombe   725 ALDTSYSYVSAMNAHSEYWKNVDLAHFILTQL 756

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgBNP_001259535.1 SRPBCC_PITPNM1-2_like 1..268 CDD:176898
DDHD 746..924 CDD:280937 58/219 (26%)
LNS2 1072..1203 CDD:197870
SPAC20G8.02NP_593319.1 DDHD 550..757 CDD:280937 59/221 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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