DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgB and LPIN1

DIOPT Version :9

Sequence 1:NP_001259535.1 Gene:rdgB / 32340 FlyBaseID:FBgn0003218 Length:1297 Species:Drosophila melanogaster
Sequence 2:NP_001248357.1 Gene:LPIN1 / 23175 HGNCID:13345 Length:975 Species:Homo sapiens


Alignment Length:867 Identity:161/867 - (18%)
Similarity:265/867 - (30%) Gaps:285/867 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   412 SKSNSDEEF-------FDCLDTNETNSLAKWSSLELLGEG--DDSPPPHGG---PSSAASVGGRG 464
            |..|||.|:       .||..|.        ..|.:..||  ..|.||...   ||.:.| |.|.
Human   277 SYPNSDREWSPTPSSLVDCKRTA--------PHLAVAAEGGLSSSCPPQSSLFHPSESPS-GSRP 332

  Fly   465 NSRQEDSIFNQDFLMRVASER------------GNKRQLRSSASVDRSHDSSPPGSPSTPSCPTT 517
            ::.:.||     .|:..::||            |...|...|:|..:..:|||..|...  |..:
Human   333 STPKSDS-----ELVSKSTERTGQKNPEMLWLWGELPQAAKSSSPHKMKESSPLSSRKI--CDKS 390

  Fly   518 ILILVVHAGSVLDAASELTAKKSDVTTFRGSFEAVMRQHYPSLLTHVTIKMVPCPSICTDALGIL 582
                  |..::...:|:..:.:|  .|..|.  |::.|:.|    ...::.|....:  :.||..
Human   391 ------HFQAIHSESSDTFSDQS--PTLVGG--ALLDQNKP----QTEMQFVNEEDL--ETLGAA 439

  Fly   583 SSLSPYSFDASPSAADIPNIADVPIGAIPLLSVASPEFHETVNKTVAAANIVYHEFLKSEEGHGF 647
            :.|.|...:..|.:|.:.                     :|.|||.:.:.      .:.:.....
Human   440 APLLPMIEELKPPSASVV---------------------QTANKTDSPSR------KRDKRSRHL 477

  Fly   648 SGQIVMLGDSMGSLLAYEAL-CRSNGSQPGTASGASNSGGDAATNINTHNPLSPRNSRLDDDERF 711
            ....|.|.|.........|| ...||...|.|..||::|..:|    ..:|.|..:|.:|..   
Human   478 GADGVYLDDLTDMDPEVAALYFPKNGDPSGLAKHASDNGARSA----NQSPQSVGSSGVDSG--- 535

  Fly   712 IEADLDAKRLLVAPSPRRRRSSSSSDSR-ATKLDFEVCDFFMFGSPLSVVLAARKLHDAKAALPR 775
            :|:..|..|.|  ||.........||.| .||      |.|     |...::.::..|..|.:..
Human   536 VESTSDGLRDL--PSIAISLCGGLSDHREITK------DAF-----LEQAVSYQQFVDNPAIIDD 587

  Fly   776 PNC-----HQVYNLFHPTDPIASRLEPLLSARFSILAPVNVPRYAKYPLGNGQPLHLLEVIQSHP 835
            ||.     .:.||.        :...|||.|..:...|  :|:                      
Human   588 PNLVVKIGSKYYNW--------TTAAPLLLAMQAFQKP--LPK---------------------- 620

  Fly   836 QHFNDGNNLLAGRRLSDASMQSTISGLIENVSLSTIHALQNKWWGTKRLDYALYCPEGLSNFPAH 900
                                     ..:|::....:.....:||.:.|........|   :.|..
Human   621 -------------------------ATVESIMRDKMPKKGGRWWFSWRGRNTTIKEE---SKPEQ 657

  Fly   901 ALPHLFHASYWESPDVIAFILRQIGKFEGIPFVGSNDDKDNASFHPGQ-------PREKWIK--K 956
            .|....| |..|.|..::...|       :....|:.|::.|:..|..       |...:.|  :
Human   658 CLAGKAH-STGEQPPQLSLATR-------VKHESSSSDEERAAAKPSNAGHLPLLPNVSYKKTLR 714

  Fly   957 RTSVKLKNVAANHRANDVIVQEGREQRLNARFMYGPLDMITLHGEKVDVHIMKDPPAGEWTFLST 1021
            .||.:||::...:..|||:.....:.:...|.                          |.|....
Human   715 LTSEQLKSLKLKNGPNDVVFSVTTQYQGTCRC--------------------------EGTIYLW 753

  Fly  1022 EVTDKNGRISYSIPDQVSLGYGIYPVKMVVRGDHTSVDCYMAVVPPLTECVVFSIDGSFTAS--- 1083
            ...||                                            .::..|||:.|.|   
Human   754 NWDDK--------------------------------------------VIISDIDGTITRSDTL 774

  Fly  1084 ---MSVTGRDPKVRAGAVDVCRHWQELGYLLIYIT----GRPDMQQQRVVSWLSQHN--FPHGLI 1139
               :...|:| ....|...:.....:.||..:|.:    |..|| .:..:.|:::..  .|.|.:
Human   775 GHILPTLGKD-WTHQGIAKLYHKVSQNGYKFLYCSARAIGMADM-TRGYLHWVNERGTVLPQGPL 837

  Fly  1140 -----SFADGLSTDPLGHK--------TAYLNNLVQNHGISITAAYGS-SKDISVYTNVGMRTDQ 1190
                 |....|..:.:..|        ...:.||...:.....||:|: ..|:..|..||:..::
Human   838 LLSPSSLFSALHREVIEKKPEKFKVQCLTDIKNLFFPNTEPFYAAFGNRPADVYSYKQVGVSLNR 902

  Fly  1191 IFIVGKVGKKLQSNATVLSDGY 1212
            ||.|...|:.:|.:|......|
Human   903 IFTVNPKGELVQEHAKTNISSY 924

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgBNP_001259535.1 SRPBCC_PITPNM1-2_like 1..268 CDD:176898
DDHD 746..924 CDD:280937 27/182 (15%)
LNS2 1072..1203 CDD:197870 33/156 (21%)
LPIN1NP_001248357.1 Lipin_N 50..155 CDD:282436
Lipin_mid 549..639 CDD:293481 21/157 (13%)
LNS2 711..936 CDD:285447 49/286 (17%)
AF1Q 940..>969 CDD:259154
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5083
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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