DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgB and Pitpnm2

DIOPT Version :9

Sequence 1:NP_001259535.1 Gene:rdgB / 32340 FlyBaseID:FBgn0003218 Length:1297 Species:Drosophila melanogaster
Sequence 2:XP_006530277.1 Gene:Pitpnm2 / 19679 MGIID:1336192 Length:1385 Species:Mus musculus


Alignment Length:1475 Identity:616/1475 - (41%)
Similarity:813/1475 - (55%) Gaps:329/1475 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLIKEYRIPLPLTVEEYRIAQLYMIAKKSREESHGEGSGVEIIINEPYKDGPGGNGQYTKKIYHV 65
            |:|||||||||:||:||||||||||.||||.|:||:||||||:.|.||.|||||:||||.|:|||
Mouse     1 MIIKEYRIPLPMTVDEYRIAQLYMIQKKSRNETHGQGSGVEILENRPYTDGPGGSGQYTHKVYHV 65

  Fly    66 GNHLPGWIKSLLPKSALTVEEEAWNAYPYTRTRYTCPFVEKFSLDIETYYYPDNGYQDNVFQLSG 130
            |.|:|||.:|:|||:||.|.||:||||||||||:|||||||||:||||:|..|.|..:|||.||.
Mouse    66 GMHIPGWFRSILPKAALRVVEESWNAYPYTRTRFTCPFVEKFSIDIETFYKTDTGENNNVFNLSP 130

  Fly   131 SDLRNRIVDVIDIVKDQLWGGDYVKEEDPKHFVSDKTGRGPLAEDWLEEYWREVKGKKQPTPRNM 195
            .:....|.|:||||||.:...:|..|||||.|.|.||.||||:|:|::||      ||:..|   
Mouse   131 VEKSQLITDIIDIVKDPVPPSEYKTEEDPKLFQSVKTCRGPLSENWIQEY------KKRLLP--- 186

  Fly   196 SLMTAYKICRVEFRYWGMQTKLEKFIHDVALRKMMLRAHRQAWAWQDEWFGLTIEDIRELERQTQ 260
             :|.|||:|:|||||||||:|:|:||||..||::|:|||||||.|||||:|||:|.||||||:.|
Mouse   187 -IMCAYKLCKVEFRYWGMQSKIERFIHDTGLRRVMVRAHRQAWCWQDEWYGLTMEKIRELEREVQ 250

  Fly   261 LALAKKMG-----GGEECSDDSVSEPYVSTAATAASTTGSERKKSAPAVPPIVTQQPPSAEASSD 320
            |.|::||.     |..|.|.||                                       |:.|
Mouse   251 LMLSRKMAQFSEEGPSELSKDS---------------------------------------ATKD 276

  Fly   321 EEGEEEEDDDEDENDAIGTGVDLSANQGGSAQRSRSQSIQMAQKGKFGSKGALHSPVGSAHSFDL 385
            :......|......:.:|.|  |......|::.|||           ..:||             
Mouse   277 QASGTTSDPGSKNGEPLGRG--LKKQWSTSSKSSRS-----------SKRGA------------- 315

  Fly   386 QSKKPHAKTAPRRH-VANWRMERLEVDSKSNSDEEFFD------CLDTNETNSLAKWSSLELLGE 443
                     :|.|| ::.|||:.:..||...|:|||||      |.:..:...:.||:|.:|: :
Mouse   316 ---------SPSRHSISEWRMQSIARDSDEGSEEEFFDAHENLYCTEEKQAKDMTKWNSNDLM-D 370

  Fly   444 GDDSPPPHGGPSSAASVGGRGNSRQEDSIFNQDFLMRVASERGNKRQLRSSA---SVDRSHDSSP 505
            ..:||.|               ...:|.|:.|.         |::.::.||.   ::.....|.|
Mouse   371 KMESPEP---------------EESQDEIYQQS---------GSEFRVASSVEQLNIIEDEVSQP 411

  Fly   506 PGSPSTPSCPTTILILVVHAGSVLD-AASELTAKKSDVTTFRGSFEAVMRQHYPSLLTHVTIKMV 569
            ..:|  || ...:|:||:|.|::|| .|.:.::|:.|..|....|:.|||.||||.|.|:.|::|
Mouse   412 LAAP--PS-KIHVLLLVLHGGTILDTGAGDPSSKQGDTNTITNVFDTVMRVHYPSALGHLAIRLV 473

  Fly   570 PCPSICTDALGILSSLSPYSFDAS--PSAADIPNIADVPIGAIPLLSVASPEFHETVNKTVAAAN 632
            |||.||.||..::|:||||..|..  .|:.|     .:|:.|:|||:.:||::.|.|...:..||
Mouse   474 PCPPICADAFALVSNLSPYGHDEGCLSSSQD-----HIPLAALPLLATSSPQYQEAVATVIQRAN 533

  Fly   633 IVYHEFLKSEEGHGFSGQIVMLGDSMGSLLAYEALCRS------------NGS----------QP 675
            :.|.:|:||:||..|:||:.::||.:|.:||::|||.|            .||          .|
Mouse   534 LAYGDFIKSQEGVTFNGQVCLIGDCVGGILAFDALCYSGQPVSESQSSSRRGSVVSMQDADLLSP 598

  Fly   676 GT------ASGASNSGGDAATNINTHNPLS------PRNSRLDDDERFI----------EAD--- 715
            ||      .||.|..||...:::.:...||      ||::..:|..|.:          |.|   
Mouse   599 GTLANAAHCSGGSGGGGSGGSSLESSRHLSRSNIDIPRSNGTEDSRRQLPRKRSDSSTYELDTIQ 663

  Fly   716 --------LDAKRLLVAPSPRRRRSSSSSDSRAT--KLDFEVCDFFMFGSPLSVVLAARKLHDAK 770
                    |.|..|...||.||..||:..|....  |.|||:.|.|:||.||.:|||.|     |
Mouse   664 QHQAFLSSLHASVLRNEPSSRRSSSSTMLDGAGALGKFDFEIADLFLFGCPLGLVLALR-----K 723

  Fly   771 AALP-------RPNCHQVYNLFHPTDPIASRLEPLLSARFSILAPVNVPRYAKYPLGNGQPLHLL 828
            ..:|       ||.|.||||||||.||.||||||||..||..|.|.::|||.:||||:|....|:
Mouse   724 TVIPSLDVFQLRPACQQVYNLFHPADPSASRLEPLLERRFHSLPPFSIPRYQRYPLGDGCSTLLV 788

  Fly   829 EVIQSHPQHFNDGNNLL------------------------------------------------ 845
            |.:|.:|:...:|..|.                                                
Mouse   789 ETVQRNPELVLEGGPLAPLPHGDSFLETSIPVPALTWQDGPRQSLGCSESDVLQTHNTVFQEHAA 853

  Fly   846 --------AG---RRLSDASMQSTISGLIENVSLSTI---------HA----------------- 873
                    ||   ||.|:.|:.|.:||:.|:.:.|:|         |.                 
Mouse   854 PSSPGTAPAGRGFRRASEISIASQVSGMAESYTASSIAQKGPSSLNHTPSIRRLSLLALPPPSPT 918

  Fly   874 ----------------------------LQNKWWGTKRLDYALYCPEGLSNFPAHALPHLFHASY 910
                                        :..||||.||:|||||||:.|:.||..||||||||||
Mouse   919 TQGPRARARQVSPNLERAPCLPDLDIGEVAAKWWGQKRIDYALYCPDALTAFPTVALPHLFHASY 983

  Fly   911 WESPDVIAFILRQIGKFEGIPFVGSNDDKDNASFHPGQPREKWIKKRTSVKLKNVAANHRANDVI 975
            |||.||::|:|||:.:.:....: ..|.|:.:.|.|.||||:|.:|||.|||:|||||||.||.:
Mouse   984 WESTDVVSFLLRQVMRHDSSSIL-ELDGKEVSVFTPSQPRERWQRKRTHVKLRNVAANHRINDAV 1047

  Fly   976 VQEGREQRLNARFMYGPLDMITLHGEKVDVHIMKDPPAGEWTFLSTEVTDKNGRISYSIPDQVSL 1040
            ..|...|.:..|||||||||:||.|||||||||..||:|||..|.|.||:.:||:||:||:...|
Mouse  1048 ANEDGPQVVTGRFMYGPLDMVTLTGEKVDVHIMTQPPSGEWLHLDTLVTNSSGRVSYTIPETHRL 1112

  Fly  1041 GYGIYPVKMVVRGDHTSVDCYMAVVPPLTECVVFSIDGSFTASMSVTGRDPKVRAGAVDVCRHWQ 1105
            |.|:||:|||||||||..|.|:.|:|..||.|||||||||.||:|:.|.|||||||||||.||||
Mouse  1113 GVGVYPIKMVVRGDHTFADSYITVLPRGTEFVVFSIDGSFAASVSIMGSDPKVRAGAVDVVRHWQ 1177

  Fly  1106 ELGYLLIYITGRPDMQQQRVVSWLSQHNFPHGLISFADGLSTDPLGHKTAYLNNLVQNHGISITA 1170
            :||||:||:|||||||:||||:||:|||||||::||.|||..|||.||..:|..|:....:...|
Mouse  1178 DLGYLIIYVTGRPDMQKQRVVAWLAQHNFPHGVVSFCDGLVHDPLRHKANFLKLLISELHLRAHA 1242

  Fly  1171 AYGSSKDISVYTNVGMRTDQIFIVGKVGKKLQSNATVLSDGYAAHLAGLQAVGGSRPAKGNA-RM 1234
            ||||:||::||.::.:....|:|||:..||||.....::||||||||.|:....:|||:..| ||
Mouse  1243 AYGSTKDVAVYNSISLSPMHIYIVGRPTKKLQQQCQFITDGYAAHLAQLKYNHRARPARNTATRM 1307

  Fly  1235 VIPRGCFNLPGQTANPRRRSNAFELQLANISPSSSNINSPSSGNH 1279
            .:.:|.|.||||:...|.|::.    |..||.      .||..:|
Mouse  1308 ALRKGSFGLPGQSDFLRSRNHL----LRTISA------QPSGPSH 1342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgBNP_001259535.1 SRPBCC_PITPNM1-2_like 1..268 CDD:176898 174/266 (65%)
DDHD 746..924 CDD:280937 99/297 (33%)
LNS2 1072..1203 CDD:197870 82/130 (63%)
Pitpnm2XP_006530277.1 SRPBCC_PITPNM1-2_like 1..258 CDD:176898 174/266 (65%)
DDHD 704..998 CDD:367219 100/298 (34%)
SMP2 <1041..>1190 CDD:227415 97/148 (66%)
LNS2 1144..1275 CDD:197870 82/130 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 389 1.000 Domainoid score I787
eggNOG 1 0.900 - - E1_COG5083
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H7915
Inparanoid 1 1.050 1028 1.000 Inparanoid score I274
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48872
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002342
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_104036
Panther 1 1.100 - - LDO PTHR10658
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3231
SonicParanoid 1 1.000 - - X1383
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.860

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