DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdgB and pitpnm2

DIOPT Version :9

Sequence 1:NP_001259535.1 Gene:rdgB / 32340 FlyBaseID:FBgn0003218 Length:1297 Species:Drosophila melanogaster
Sequence 2:XP_012813026.1 Gene:pitpnm2 / 100216221 XenbaseID:XB-GENE-1011954 Length:1435 Species:Xenopus tropicalis


Alignment Length:1494 Identity:625/1494 - (41%)
Similarity:833/1494 - (55%) Gaps:325/1494 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLIKEYRIPLPLTVEEYRIAQLYMIAKKSREESHGEGSGVEIIINEPYKDGPGGNGQYTKKIYHV 65
            |||||||||||:|||||||||||||.||||||:.||||||||:.|.||.|||||.||||.|:||:
 Frog     1 MLIKEYRIPLPMTVEEYRIAQLYMIQKKSREETCGEGSGVEILENRPYTDGPGGTGQYTHKVYHI 65

  Fly    66 GNHLPGWIKSLLPKSALTVEEEAWNAYPYTRTRYTCPFVEKFSLDIETYYYPDNGYQDNVFQLSG 130
            |.|:|.|.:|:|||:||.||||:||||||||||||||||||||:||||||..|.|...|||.||.
 Frog    66 GMHIPSWFRSILPKAALRVEEESWNAYPYTRTRYTCPFVEKFSIDIETYYKSDYGDLANVFNLSP 130

  Fly   131 SDLRNRIVDVIDIVKDQLWGGDYVKEEDPKHFVSDKTGRGPLAEDWLEEYWREVKGKKQPTPRNM 195
            ::.|...:|.||||||.:...:|..|||||.:.|.||.||||::||:|::...: ||       .
 Frog   131 AEKRQTTLDPIDIVKDPIPPHEYKPEEDPKLYKSIKTKRGPLSDDWIEDHRNNI-GK-------Y 187

  Fly   196 SLMTAYKICRVEFRYWGMQTKLEKFIHDVALRKMMLRAHRQAWAWQDEWFGLTIEDIRELERQTQ 260
            .:|.|||:|:|||||||||:|:|:|||||.|||:|:|||||||.|||||:||||||||:||::||
 Frog   188 PIMCAYKLCKVEFRYWGMQSKIERFIHDVGLRKVMVRAHRQAWCWQDEWYGLTIEDIRQLEKETQ 252

  Fly   261 LALAKKMG------------GGEE--CSDDSVSEPYVSTAATAASTTGSERKKSAPAVPPIVTQQ 311
            |.||:||.            |.:|  |..|:.|:..:|...|..|...:|..             
 Frog   253 LMLAQKMAQFSLNENEAEQHGAKESPCEKDTESKAIISIETTEESAGMTESL------------- 304

  Fly   312 PPSAEASSDEEGEEEEDDDEDENDAIGTGVDLSANQGGSAQRSRSQSIQMAQKGKFGSKGALHSP 376
                                       :|..|:.....|::.|||           ..:||    
 Frog   305 ---------------------------SGRGLTKQWSTSSRSSRS-----------SKRGA---- 327

  Fly   377 VGSAHSFDLQSKKPHAKTAPRRH-VANWRMERLEVDSKSNSDEEFFDC---LDTNE---TNSLAK 434
                              :|.|| ::.|||:.:..||..:||:||||.   |..||   ...:.|
 Frog   328 ------------------SPSRHSISEWRMQSIARDSDESSDDEFFDAYEDLSDNEEVLPKEITK 374

  Fly   435 WSSLELLGE---------GDDSPPPHGGPSSAASVGGRGNSRQEDSIFNQDFLMRVASERGNKRQ 490
            |||.:|:.:         .|||.......:.::||.|........::.:...:.|:.:.     .
 Frog   375 WSSNDLMDKIETAENDELQDDSYHEPAEYTVSSSVEGLSIMETHTTVIHAQVIPRIPAV-----T 434

  Fly   491 LRS--SASVDRSHDSSPPGSPSTPSCPTTILILVVHAGSVLD-AASELTAKKSDVTTFRGSFEAV 552
            |.:  ::..|.:.|.|  ...|...|...:||||:|.|::|| ...:..:|:.||.|....|:.|
 Frog   435 LTNVITSPTDLAADES--AQVSAQPCKIHVLILVLHGGNILDTGCGDQNSKQGDVNTINSVFDTV 497

  Fly   553 MRQHYPSLLTHVTIKMVPCPSICTDALGILSSLSPYSFDASPSAADIPNIAD-VPIGAIPLLSVA 616
            ||.|||:.|.|:.:|:||||:||.:|..::|||||||:|    ...:.|..| :|:.|:|||:.:
 Frog   498 MRVHYPAALGHIAVKLVPCPAICAEAFSLVSSLSPYSYD----EGCLSNSQDHIPLAALPLLATS 558

  Fly   617 SPEFHETVNKTVAAANIVYHEFLKSEEGHGFSGQIVMLGDSMGSLLAYEALCRSN---------- 671
            ||::.|.|...:..||.||.||.||:||..|:||:.::||.:|.:|.::|||.||          
 Frog   559 SPQYLEAVATVIHRANQVYAEFTKSQEGMSFTGQVCLVGDCVGGILGFDALCYSNQTVSESQNSS 623

  Fly   672 --GS----------QPGTASGASNSGGDAATNINTHNPLS------PRNS---------RLDDDE 709
              ||          .||.:  .:||....::|:.|...||      ||::         |...|.
 Frog   624 RRGSVVSVQDTDLLSPGIS--VNNSYCSTSSNLETSRHLSRSNIDIPRSNGEDPKRQLPRKRSDS 686

  Fly   710 RFIEAD-----------LDAKRLLVAPSPRRRRSSSSSDSRAT-KLDFEVCDFFMFGSPLSVVLA 762
            ...|.|           |.:..|...|..||..||:..|..:. |.|||:.|||:|||||.:|||
 Frog   687 STYELDTIKQHQAFLSSLHSSVLRNDPGSRRSSSSTMLDGGSIGKFDFEITDFFLFGSPLGLVLA 751

  Fly   763 ARKLHDAKAALP-------RPNCHQVYNLFHPTDPIASRLEPLLSARFSILAPVNVPRYAKYPLG 820
            .|     |..:|       ||.|.||||||||.||.|||:||||..:|.:|.|.|||||.::|||
 Frog   752 LR-----KTVIPLLDVFQLRPGCQQVYNLFHPADPSASRVEPLLEKKFHLLPPFNVPRYQRFPLG 811

  Fly   821 NGQPLHLLEVIQSHPQHFNDGNNLLA--------------------------------------- 846
            :|....|:|.||::|....:|:..:|                                       
 Frog   812 DGNSALLVEAIQNNPILLMEGSPAVALQRQDGVMETSIPVPVLSCQDTSSKHATCVDSDVVQFHG 876

  Fly   847 --------------------GRRLSDASMQSTISGLIENVSLSTI-------------------- 871
                                .||.|:.|:.|.:||:.::.:.|.|                    
 Frog   877 AVFVENASPSSPITAPHFRGYRRASEISIASQVSGMADSYTASNIANKTKNDLKNSRKLSLLSQL 941

  Fly   872 -------------------HALQN-----------------------------KWWGTKRLDYAL 888
                               |:.|:                             |||||||:||||
 Frog   942 ALPYQSQTIPSTPPNHRQYHSEQSKIGRTIEVGDRRHKMNPGIQPSDISRVAAKWWGTKRIDYAL 1006

  Fly   889 YCPEGLSNFPAHALPHLFHASYWESPDVIAFILRQIGKFEG---IPFVGSNDDKDNASFHPGQPR 950
            |||:.|:.||..|||||||||||||.||::|:|||:.:.|.   :..||    |:.:.|.|.:||
 Frog  1007 YCPDALTAFPTVALPHLFHASYWESTDVVSFLLRQVMRHENSSILDLVG----KEVSEFSPSKPR 1067

  Fly   951 EKWIKKRTSVKLKNVAANHRANDVIVQEGREQRLNARFMYGPLDMITLHGEKVDVHIMKDPPAGE 1015
            |||::|||.|||:|||||||.||.:..|...|.:..|||||||||:||.|||||:|||..|||||
 Frog  1068 EKWLRKRTHVKLRNVAANHRINDAVANEDGPQTMTGRFMYGPLDMVTLTGEKVDIHIMTQPPAGE 1132

  Fly  1016 WTFLSTEVTDKNGRISYSIPDQVSLGYGIYPVKMVVRGDHTSVDCYMAVVPPLTECVVFSIDGSF 1080
            |.:..||:::.:|||||.||:...||.|:||||||||||||..|.|:.|:|...|.|||||||||
 Frog  1133 WVYFDTEISNSSGRISYVIPENKRLGIGVYPVKMVVRGDHTYADSYLTVLPKGAEFVVFSIDGSF 1197

  Fly  1081 TASMSVTGRDPKVRAGAVDVCRHWQELGYLLIYITGRPDMQQQRVVSWLSQHNFPHGLISFADGL 1145
            .||:|:.|.|||||||||||.||||:||||:||:|||||||:||||:||:|||||||::||.|||
 Frog  1198 AASVSIMGSDPKVRAGAVDVVRHWQDLGYLIIYVTGRPDMQKQRVVAWLAQHNFPHGIVSFCDGL 1262

  Fly  1146 STDPLGHKTAYLNNLVQNHGISITAAYGSSKDISVYTNVGMRTDQIFIVGKVGKKLQSNATVLSD 1210
            ..|||.||..:|.:|:.:..:.:.|||||:|||:||:::|:...||:|||:..||||.....:::
 Frog  1263 VHDPLRHKANFLKSLIHDVHMKVHAAYGSTKDITVYSSLGLSPMQIYIVGRPTKKLQHQCQFITE 1327

  Fly  1211 GYAAHLAGLQAVGGSRPAKGNARMVIPRGCFNLPGQTANPRRRSNAFELQLANISPSSSNINSP 1274
            |||||||.|:....|||||..:||.:.:|.|.||||:...|:|::.  |:..:..|:.|:.:.|
 Frog  1328 GYAAHLAQLEYNHRSRPAKNTSRMALRKGSFCLPGQSDFLRKRNHL--LRTISSQPTGSSNHKP 1389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgBNP_001259535.1 SRPBCC_PITPNM1-2_like 1..268 CDD:176898 179/266 (67%)
DDHD 746..924 CDD:280937 100/311 (32%)
LNS2 1072..1203 CDD:197870 85/130 (65%)
pitpnm2XP_012813026.1 SRPBCC_PITPNM1-2_like 1..260 CDD:176898 179/266 (67%)
DDHD 735..1043 CDD:397132 101/312 (32%)
SMP2 <1050..>1235 CDD:227415 117/188 (62%)
LNS2 1189..1320 CDD:197870 85/130 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 406 1.000 Domainoid score I697
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H7915
Inparanoid 1 1.050 711 1.000 Inparanoid score I638
OMA 1 1.010 - - QHG48872
OrthoDB 1 1.010 - - D122895at2759
OrthoFinder 1 1.000 - - FOG0002342
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR10658
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3231
SonicParanoid 1 1.000 - - X1383
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.110

Return to query results.
Submit another query.