DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rtc1 and AT5G22100

DIOPT Version :9

Sequence 1:NP_572919.1 Gene:Rtc1 / 32338 FlyBaseID:FBgn0020909 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_680196.1 Gene:AT5G22100 / 832271 AraportID:AT5G22100 Length:375 Species:Arabidopsis thaliana


Alignment Length:381 Identity:149/381 - (39%)
Similarity:226/381 - (59%) Gaps:25/381 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 RGSNFLKQRLILACLSGKPVKISQIRSEDETAPGLREYEISLIRLLDKITNGTKIELNPAGTSVM 78
            :||...:|||:|:.||..|:.|.:||: |||.||||.:|::|:|||:.:|:...:::|..||.:.
plant     8 KGSQSFRQRLLLSTLSSTPISIDEIRA-DETIPGLRPHEVNLLRLLEIVTDDAVVDINETGTRLK 71

  Fly    79 FSPGLLHGGQ-LNHDCCVQRGIGYYLDALIALGPFCKSPLQCTLRGVTNSKDSPSVDHIKGAALS 142
            :.||.:.||: |.|.|.:.|.|||||:.|:.||.|.|.||...|:|:||.....|||..:...|:
plant    72 YKPGTIVGGKNLVHSCSLSRSIGYYLEPLLLLGLFGKKPLSIRLKGITNDPRDASVDTFRSTTLN 136

  Fly   143 LLKRFLLVDEGLELKVVRRGVAPLGGGEIIFRCPVRKSLRAIQFQSQGMVKRIRGTVYACKVSPA 207
            ::|||.:..|.||||:..|||||.||||::...|..|:|.|:.:..:||||:||||.::.:|:..
plant   137 IIKRFGVPAEDLELKIEARGVAPNGGGEVLLTVPNIKTLSAVHWVEEGMVKKIRGTTFSTRVTSD 201

  Fly   208 MANRTVEAAKGCMLKFLPDVYIYTDQNKGKMSGNSPGFGICLIAETTDGVCFAADCCSNTR---- 268
            ..:....||:|.....||||:|:.|...|..:|.|||:||.|.||||.|...:||...:..    
plant   202 FEHSMRFAARGIFNNLLPDVHIFQDHRAGAQAGKSPGYGISLAAETTTGCFISADTTVSCERPDE 266

  Fly   269 ------EESEDTPSIPENLGKEVALRLLDEIYRGGCVDSSYQWLAALYIALGQKHVSKFLTGALS 327
                  |:.|.:|:  |:.|.|||..||.||.:||.|||::|.|..|..||.::.|||...|.||
plant   267 TGELDVEKKERSPA--EDTGVEVASWLLQEIEKGGVVDSTHQGLLFLLCALSEQDVSKVRVGTLS 329

  Fly   328 NYTVHFLQHLRDFFSITFKLENPEAEDEDEAENVRGAQKVLMACVGIGYTNINKRV 383
            .|.|..|:::::|..:.|.:         :.:.:.|.  |::.|.|.|..|:::::
plant   330 PYAVETLRNIKEFLGVKFAI---------KPDPLTGT--VILKCTGSGLINLSRKL 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rtc1NP_572919.1 RNA_Cyclase_Class_I 7..349 CDD:238447 143/345 (41%)
18S_RNA_Rcl1p 11..384 CDD:274564 149/381 (39%)
AT5G22100NP_680196.1 18S_RNA_Rcl1p 5..375 CDD:274564 149/381 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 260 1.000 Domainoid score I485
eggNOG 1 0.900 - - E1_COG0430
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4217
Inparanoid 1 1.050 265 1.000 Inparanoid score I949
OMA 1 1.010 - - QHG53579
OrthoDB 1 1.010 - - D1423847at2759
OrthoFinder 1 1.000 - - FOG0004680
OrthoInspector 1 1.000 - - oto3976
orthoMCL 1 0.900 - - OOG6_102522
Panther 1 1.100 - - LDO PTHR11096
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3288
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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