DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rtc1 and ZK1127.5

DIOPT Version :9

Sequence 1:NP_572919.1 Gene:Rtc1 / 32338 FlyBaseID:FBgn0020909 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_495445.2 Gene:ZK1127.5 / 174151 WormBaseID:WBGene00022852 Length:379 Species:Caenorhabditis elegans


Alignment Length:376 Identity:168/376 - (44%)
Similarity:246/376 - (65%) Gaps:4/376 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LIYRGSNFLKQRLILACLSGKPVKISQIRSEDETAPGLREYEISLIRLLDKITNGTKIELNPAGT 75
            |.:.|.||.:.||..:.|||:|::|..||..|: .||:|::|..||.||:|:|||||:|::..||
 Worm     6 LEFSGCNFFRIRLAYSILSGRPIRIINIRKNDD-RPGIRDFESKLIGLLEKVTNGTKVEISRTGT 69

  Fly    76 SVMFSPGLLHGGQLNHDCCVQRGIGYYLDALIALGPFCKSPLQCTLRGVTNSKDSPSVDHIKGAA 140
            .|:|.||::.||.:|.||..:|.|.|:|:.|:.|.||||.|:...|:||||:....|||.:|.:.
 Worm    70 QVIFRPGMITGGVVNLDCGTERCISYFLEPLLLLSPFCKVPMVIKLKGVTNAPGEISVDGMKASW 134

  Fly   141 LSLLKRFLLVDEGLELKVVRRGVAPLGGGEIIFRCPVRKSLRAIQFQSQGMVKRIRGTVYACKVS 205
            |.:..:|:|.||.|::|:..||:.|.|||.::|..|:.|:||.::.|..|.|.:|||..|..||:
 Worm   135 LKVYNKFVLNDEKLDIKIQARGLKPEGGGVVVFTAPIVKTLRPVKRQQVGKVCKIRGQAYVTKVT 199

  Fly   206 PAMANRTVEAAKGCMLKFLPDVYIYTDQNKGKMSGNSPGFGICLIAETTDGVCFAADCCSNTREE 270
            |::|.|.::|||..|..::.||||..||.||...|.|||:|:.|.||||:||.:.|:..|..:.|
 Worm   200 PSLAYRMIDAAKKAMHGYISDVYITVDQRKGDAGGASPGYGLFLTAETTEGVIYQAEAISRPKGE 264

  Fly   271 SEDTPSIPENLGKEVALRLLDEIYRGGCVDSSYQWLAALYIALGQKHVSKFLTGALSNYTVHFLQ 335
            | ..|.:||::|.|....||.:||.||.:|||.|.||:.::.|..|.||.||.|.|..|:||.|:
 Worm   265 S-GVPILPEDIGIEAGHALLQQIYMGGALDSSAQILASTFMTLCPKDVSHFLYGPLPMYSVHALR 328

  Fly   336 HLRDFFSITFKLEN-PEAEDEDEAENVRG-AQKVLMACVGIGYTNINKRVI 384
            ||:.||.|.||:|: .:...|:||:...| |.|.::..||:||:|:||.::
 Worm   329 HLKQFFEIEFKMEDFKKTLKEEEADLKTGSADKAMVTAVGVGYSNLNKTIL 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rtc1NP_572919.1 RNA_Cyclase_Class_I 7..349 CDD:238447 154/337 (46%)
18S_RNA_Rcl1p 11..384 CDD:274564 168/374 (45%)
ZK1127.5NP_495445.2 RNA_Cyclase_Class_I 2..342 CDD:238447 154/337 (46%)
18S_RNA_Rcl1p 6..378 CDD:274564 168/373 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160156336
Domainoid 1 1.000 299 1.000 Domainoid score I775
eggNOG 1 0.900 - - E1_COG0430
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4217
Inparanoid 1 1.050 323 1.000 Inparanoid score I1474
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53579
OrthoDB 1 1.010 - - D1423847at2759
OrthoFinder 1 1.000 - - FOG0004680
OrthoInspector 1 1.000 - - oto19311
orthoMCL 1 0.900 - - OOG6_102522
Panther 1 1.100 - - LDO PTHR11096
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1075
SonicParanoid 1 1.000 - - X3288
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.840

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