DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdcd4 and pdcd4b

DIOPT Version :9

Sequence 1:NP_001096977.1 Gene:Pdcd4 / 32337 FlyBaseID:FBgn0030520 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_945329.1 Gene:pdcd4b / 321061 ZFINID:ZDB-GENE-030131-9847 Length:470 Species:Danio rerio


Alignment Length:509 Identity:215/509 - (42%)
Similarity:286/509 - (56%) Gaps:61/509 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VESNNKRATNGGRHFTPPSDSDSKESSVERELNEEIEAVELNGSGGGGHSNGHVKKLMAVEDGRI 67
            :.:|...|.|....| |..|.|   |:....:|.||     ||       |........:.:.|:
Zfish     9 LNANPVEAGNLSDSF-PSGDED---STFTANVNNEI-----NG-------NWISAPTSTIHEARL 57

  Fly    68 KRKAKRLIQRQNSGSGGSANQTNGNGAAGAGGAHGASVMPLGINRIMP--SPGGYVVPHRRWKNS 130
            |.|.||.:::.:|...|..:..:.||.|              :..::|  ||.|.::       :
Zfish    58 KAKVKRRLRKNSSRDSGRGDSLSDNGEA--------------VRSVVPPTSPKGKLL-------N 101

  Fly   131 RRSRTINRGRGLPKKGGGGGKGVWGLPGSEALAEVY-EDE---NDPNYDSECNDRNVELREVITE 191
            ||||| .:|||||||||.|||||||.||     ||| |||   .|||||:|  ..|.....|:..
Zfish   102 RRSRT-GKGRGLPKKGGAGGKGVWGTPG-----EVYGEDEVDYKDPNYDAE--QENCVYETVVLP 158

  Fly   192 ITREEFFKLAEPIVLEYYEHGDPHEVALSFDEILQAPMREHVTSILVEIAMDHKDSQREMTSVLI 256
            :..|.|.|...|||.||:||||.:|||....|:....||..|..:.|.:|::.|.|.||:||.|:
Zfish   159 LDEEAFEKTVTPIVQEYFEHGDANEVAELLAELNLGSMRGDVPMLAVSLALEAKASHRELTSRLL 223

  Fly   257 SDLYGRVITGKDIEKGFNMLLANLPDLVLDTPEAPIMLGNFMARAVADDCIPPKFV--AKSGEEL 319
            |:|.|||:|..|::..|:.||..|||||||||.||.|||.|:||||||..:|..|:  .|...:.
Zfish   224 SELCGRVLTAGDVQASFHKLLKELPDLVLDTPGAPQMLGQFIARAVADSILPKTFLDGYKGRVDC 288

  Fly   320 RHLGLGEHAEQALRRADSLIYKHVWA--HLDNVWGMGGPLRPVKTITMQMELLLKEYLSSRDVAE 382
                  |:|..||.||..|:....|.  .:|::||.||..|||..:..::.|||||||.|.|..|
Zfish   289 ------EYARAALDRAAVLLRMSRWTGLRIDSLWGSGGGQRPVTQLIKEVNLLLKEYLLSGDTVE 347

  Fly   383 AQRCLRALEVPHYHHELVYEAIVMTLESLSQTTEEAMCELLKQLDLTCLVLPAGMEQGFLRAFDD 447
            |:||||.|||||:|||.||||::|.|||..:.|.:.:.:|||.|..:.::....|.:||.|.:.|
Zfish   348 AERCLRELEVPHFHHEFVYEAVIMVLESTGERTLQMLLQLLKCLCSSTIITVDQMRRGFERVYLD 412

  Fly   448 MADIVLDVPLAYIILDRFVERCNRAGFLTDKIINNVPSRGRKRFVSEGDGGHVK 501
            |.||.:|||.||.||::|||:...||.:..|:.:..|||||||.:|||||||:|
Zfish   413 MPDISIDVPCAYSILEQFVEQSFNAGVIDRKLRDLCPSRGRKRLISEGDGGHLK 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pdcd4NP_001096977.1 MA3 197..308 CDD:214714 58/110 (53%)
MA3 363..476 CDD:280933 56/112 (50%)
pdcd4bNP_945329.1 MA3 164..275 CDD:214714 58/110 (53%)
MA3 328..441 CDD:214714 56/112 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594838
Domainoid 1 1.000 115 1.000 Domainoid score I5983
eggNOG 1 0.900 - - E1_KOG0403
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H7879
Inparanoid 1 1.050 341 1.000 Inparanoid score I2325
OMA 1 1.010 - - QHG58981
OrthoDB 1 1.010 - - D412881at33208
OrthoFinder 1 1.000 - - FOG0003154
OrthoInspector 1 1.000 - - otm26453
orthoMCL 1 0.900 - - OOG6_103300
Panther 1 1.100 - - O PTHR12626
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5734
SonicParanoid 1 1.000 - - X2118
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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