DRSC/TRiP Functional Genomics Resources

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Protein Alignment HOXD4 and lab

DIOPT Version :10

Sequence 1:NP_055436.2 Gene:HOXD4 / 3233 HGNCID:5138 Length:255 Species:Homo sapiens
Sequence 2:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster


Alignment Length:259 Identity:82/259 - (31%)
Similarity:99/259 - (38%) Gaps:84/259 - (32%)


- Green bases have known domain annotations that are detailed below.


Human    15 PKFP-----PCEEYLQGGYLGE-QGADYYGGGAQGADFQPPGLYPRPDFGEQPFGGSG-PGPGSA 72
            ||.|     ...:|...|.|.. :|.   |||..|....|.|:           ||:| ||.|..
  Fly   407 PKLPASGIASMHDYQMNGQLDMCRGG---GGGGSGVGNGPVGV-----------GGNGSPGIGGV 457

Human    73 L-----------PARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPPSGTA 126
            |           .|......|.|.|....                                ||:.
  Fly   458 LSVQNSLIMANSAAAAGSAHPNGMGVGLG--------------------------------SGSG 490

Human   127 LKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTL 191
            |...::           |.|.|.:|      ||.:|.:|:.||||||||||||||.||||||:||
  Fly   491 LSSCSL-----------SSNTNNSG------RTNFTNKQLTELEKEFHFNRYLTRARRIEIANTL 538

Human   192 CLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSCSSSVAPSQHLQP---MAKDHHTDL 252
            .|:|.|:||||||||||.||..|.........:..|:|..|......|..||   ..|...:||
  Fly   539 QLNETQVKIWFQNRRMKQKKRVKEGLIPADILTQHSTSVISEKPPQQQQPQPPELQLKSQGSDL 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HOXD4NP_055436.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 31..127 20/108 (19%)
Antp-type hexapeptide 133..138 0/4 (0%)
Homeodomain 155..211 CDD:459649 39/55 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..255 10/44 (23%)
labNP_476613.1 Homeodomain 505..558 CDD:459649 39/52 (75%)

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