DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11164 and rnaseh2b

DIOPT Version :9

Sequence 1:NP_001285220.1 Gene:CG11164 / 32323 FlyBaseID:FBgn0030507 Length:340 Species:Drosophila melanogaster
Sequence 2:XP_012812404.1 Gene:rnaseh2b / 549083 XenbaseID:XB-GENE-1004443 Length:312 Species:Xenopus tropicalis


Alignment Length:290 Identity:91/290 - (31%)
Similarity:137/290 - (47%) Gaps:37/290 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 PGHGKEALFITHPDGRMM-ELVAFTEPRRSWFVDSEVCSNGRIYMTAPVDPTFLALHHLRKHCAQ 120
            |...|.::|:....|:.: |:.||.|..||||:...|..:||:.:..|:||.||.||:|.|...:
 Frog    49 PCTDKGSMFLFIDSGQQICEVKAFHEEYRSWFIGQTVQQDGRLLIATPIDPMFLVLHYLIKADKE 113

  Fly   121 RA--ISLDNIAVEE--ASTSRLLNEILDPGNLKCVADVKSSGEQKFYKYNQERTLAWLALKTRQV 181
            :.  ..::.|.|:|  .|.|.||.......:|..|.:.|..|.:|||||::|:||.||..|....
 Frog   114 QGKFQPVEQIVVDEEFPSCSMLLQCTPVSKSLHHVTEEKEIGSKKFYKYSKEKTLVWLKKKVELT 178

  Fly   182 AKILKEKQVHCGHSAQSQNFVRSEKLVAENVSNEMDYTRMACDYVGRYLDADLHGLLTSYLHIPS 246
            .|:||...:..|...||..|:|:.:  ..:|..| ||||.|...:..||..||...|:.||.:| 
 Frog   179 VKVLKSSNICVGGGVQSATFIRNTQ--GSDVKEE-DYTRYAHGLISEYLTEDLREDLSKYLGLP- 239

  Fly   247 EIQAIVEEKAASQKRKSVAGKNEGSDSKKIKLNESDAAAKLKSSGLVDSDGDPNATITSPTAAPL 311
            ::.:...|....:::.|.|......|..|.   .||:..|..:|                     
 Frog   240 DLSSPTPEPPVKKRKVSEAPVEAEEDYTKF---NSDSKNKKSNS--------------------- 280

  Fly   312 KERSLTAKEKALAKGAK-GTKSIASFFKAK 340
               .:||.:|:|||..| |.|:|::||..|
 Frog   281 ---KMTAAQKSLAKVDKSGMKNISAFFSPK 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11164NP_001285220.1 RNase_H2-B 39..338 CDD:187751 89/286 (31%)
rnaseh2bXP_012812404.1 RNase_H2-B 30..305 CDD:187751 89/286 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 67 1.000 Domainoid score I9728
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41572
Inparanoid 1 1.050 115 1.000 Inparanoid score I4687
OMA 1 1.010 - - QHG59373
OrthoDB 1 1.010 - - D1092212at2759
OrthoFinder 1 1.000 - - FOG0005677
OrthoInspector 1 1.000 - - oto103644
Panther 1 1.100 - - LDO PTHR13383
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R10927
SonicParanoid 1 1.000 - - X6122
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1313.110

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