DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11164 and Rnaseh2b

DIOPT Version :9

Sequence 1:NP_001285220.1 Gene:CG11164 / 32323 FlyBaseID:FBgn0030507 Length:340 Species:Drosophila melanogaster
Sequence 2:XP_008768984.1 Gene:Rnaseh2b / 361056 RGDID:1359710 Length:308 Species:Rattus norvegicus


Alignment Length:304 Identity:94/304 - (30%)
Similarity:127/304 - (41%) Gaps:65/304 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 HPGHGKEALFITHPDG---RMMELVAFTEPRRSWFVDSEVCSNGRIYMTAPVDPTFLALHHLRKH 117
            |.|.|...|.    |.   ::.|:..|.|...|||::..|.|.|.::...|:||.||.||:|.|.
  Rat    44 HSGEGATYLI----DACLQKLFEIKVFKEKHHSWFINQSVQSGGLLHFATPMDPLFLLLHYLIKA 104

  Fly   118 CAQ-RAISLDNIAVEE--ASTSRLLNEILDPGNLKCVADVKSSGEQKFYKYNQERTLAWLALKTR 179
            ..: :...||.:.|::  ...:.||.......:|:.|.:.|....:|:|||:.|:||.||..|..
  Rat   105 GKEGKYQPLDQVVVDDKFPDCTLLLRFPELEKSLRHVTEEKEVNSKKYYKYSTEKTLKWLEKKVN 169

  Fly   180 QVAKILKEKQVHCGHSAQSQNFVRSEKLVAENVSNEMDYTRMACDYVGRYLDADLHGLLTSYLHI 244
            |....||...|:.|...||..:...   |..:...|.||.|.|            |||::.|  |
  Rat   170 QTVAALKANHVNVGARVQSSAYFSG---VQVSRDKEEDYVRYA------------HGLISDY--I 217

  Fly   245 PSEIQAIVEEKAASQKRKSVAGKNEGSD--SKKIKLNESDA------AAKLKSSGLVDSDGDPNA 301
            |.|:                      ||  ||.:||.|..|      |.|||   |.|...:...
  Rat   218 PKEL----------------------SDDLSKLLKLPEPPASLPNPPAKKLK---LADEPVEAKE 257

  Fly   302 TITSPTAAPL----KERSLTAKEKALAKGAK-GTKSIASFFKAK 340
            ..|......|    |...:||.:|||||..| |.|||.:||.||
  Rat   258 DYTKFNTKDLKNGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAK 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11164NP_001285220.1 RNase_H2-B 39..338 CDD:187751 91/300 (30%)
Rnaseh2bXP_008768984.1 RNase_H2-B 30..299 CDD:187751 91/300 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352253
Domainoid 1 1.000 52 1.000 Domainoid score I11217
eggNOG 1 0.900 - - E1_KOG4705
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41572
Inparanoid 1 1.050 96 1.000 Inparanoid score I4951
OMA 1 1.010 - - QHG59373
OrthoDB 1 1.010 - - D1092212at2759
OrthoFinder 1 1.000 - - FOG0005677
OrthoInspector 1 1.000 - - oto96952
orthoMCL 1 0.900 - - OOG6_104396
Panther 1 1.100 - - LDO PTHR13383
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X6122
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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