DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DNAlig4 and K07C5.3

DIOPT Version :9

Sequence 1:NP_572907.1 Gene:DNAlig4 / 32322 FlyBaseID:FBgn0030506 Length:918 Species:Drosophila melanogaster
Sequence 2:NP_505659.1 Gene:K07C5.3 / 179441 WormBaseID:WBGene00010626 Length:493 Species:Caenorhabditis elegans


Alignment Length:254 Identity:53/254 - (20%)
Similarity:100/254 - (39%) Gaps:54/254 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DIASTIKFRDICSLFEKIKATQKVANKEEVLKSYYESFCRHRESFRRQTGLNNDQPEDGASSFYS 68
            |..|..||..:||:.::|...   :.|..|:.|..:     :::|            ||....: 
 Worm   162 DFNSFYKFVKVCSVLKEISVK---SEKSAVITSLLQ-----KKNF------------DGDLMLW- 205

  Fly    69 VLRLLLPGADTGRDTYGLQITALGRLYIRVLQL--------PTDSSD-AIRLQHRNGNMYRDYGD 124
             |..|:..:|  :.:|.:....|.:.:.::|.:        .|.|:| |:.:.|.:         
 Worm   206 -LTFLIRESD--QRSYNITDEKLIQYFAKILDMGESKIQKYVTKSNDIALSISHAH--------- 258

  Fly   125 VVYSVLKPRCFNPPSNLRLKEIHQMLDTIAN-EDTEVKQQQLIRFTEQASPEEQKWLIRLLLKSL 188
                  :.:..|......|:::.:.|:.::. ||.:.....|....::...:|...||||:.|.|
 Worm   259 ------EKKVTNEKGKWSLQKLDRYLEKLSKIEDDDAILSHLKFAAKRMRHDELDILIRLIRKEL 317

  Fly   189 GLGIGEQKIFGVLHPKAQDIYQRCSDLGHVC----NLLADRTTDLDASSSKDSKAAVKF 243
            ........|...:||||.:|:| .:.|..|.    |...:::.....||||:..|...|
 Worm   318 DTDADASIILKGVHPKAPEIFQ-SNGLDSVIEKYYNNDFEKSAQQKTSSSKNKVAEPSF 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNAlig4NP_572907.1 DNA_ligase_A_N 10..197 CDD:282522 35/196 (18%)
dnl1 84..613 CDD:273147 37/174 (21%)
Adenylation_DNA_ligase_IV 249..466 CDD:185713
OBF_DNA_ligase_IV 469..607 CDD:153437
BRCT 668..745 CDD:214602
K07C5.3NP_505659.1 zf-PARP 12..102 CDD:366219
DNA_ligase_A_N 165..317 CDD:377398 35/190 (18%)
MSCRAMM_SdrC <358..451 CDD:380146 6/18 (33%)
zf-CCHH 469..490 CDD:370948
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1793
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.