DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tth and Phf10

DIOPT Version :9

Sequence 1:NP_001285216.1 Gene:tth / 32318 FlyBaseID:FBgn0030502 Length:428 Species:Drosophila melanogaster
Sequence 2:XP_017444365.2 Gene:Phf10 / 292404 RGDID:1305266 Length:556 Species:Rattus norvegicus


Alignment Length:78 Identity:27/78 - (34%)
Similarity:30/78 - (38%) Gaps:24/78 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   343 GAGLAGVSGSGGGGGASGASANSRRSR---------GAGTRGRRR------------AKGPNSAV 386
            |.|..|..|...||.|.||....|.:|         .||||.|||            |.||.:|:
  Rat     7 GRGARGGRGRPPGGRAEGAGPGRRAARATAAAAAAAAAGTRRRRRRRRRRGALGLMAAAGPGAAL 71

  Fly   387 G---ASCDPTSPG 396
            .   ...||.|||
  Rat    72 SPRRCDSDPASPG 84

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tthNP_001285216.1 Requiem_N 24..94 CDD:290758
Phf10XP_017444365.2 WH_NTD_PHF10 133..219 CDD:411035
PHD1_PHF10 438..491 CDD:277003
PHD2_PHF10 493..536 CDD:277004
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D312433at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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