DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ndc80 and ndc80

DIOPT Version :9

Sequence 1:NP_572902.1 Gene:Ndc80 / 32316 FlyBaseID:FBgn0030500 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_001011162.1 Gene:ndc80 / 496580 XenbaseID:XB-GENE-997352 Length:640 Species:Xenopus tropicalis


Alignment Length:702 Identity:142/702 - (20%)
Similarity:271/702 - (38%) Gaps:187/702 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 RRPSASRLPQPLNLERDRASQMGVT-----------------PKRGHRFVPSTAERAIA------ 89
            ||.|.:.....|.|....|::||:|                 |..|      |:||..:      
 Frog     2 RRSSVTNRQSLLPLRVQDANRMGLTTPQSKDRQGFGKLSMSKPHSG------TSERKTSFFGKRM 60

  Fly    90 -----------------------PHSDKKWVAERAQQILEYLHGIQNSEAPTGLIADLFSRPGGL 131
                                   |..||.::.:..:|:.|:|:  :|..:.|..:.       .|
 Frog    61 SNGTARTSQYGAFGGTEKIKDPRPLHDKAFIQQCIRQLCEFLN--ENGYSQTLTVK-------SL 116

  Fly   132 RHMTIKQFVSILNFMFHHIWRNRVTVGQNHVEDITSAMQKLQYPYQVNKSWLVSPTTQHSFGHVI 196
            :..:.|.|:.|..|::..|..|.........|:|....::|.||:.::||.:.:....|::..::
 Frog   117 QGPSTKDFLKIFAFIYTFICPNYENPESKFEEEIPRIFKELGYPFALSKSSMYTVGAPHTWPQIV 181

  Fly   197 VLLDFLMDFLPPLPSSDVVEEEFPFMETMEQPSSYLNSMHCESTTIMSTTQAHAIQLDEDVNGL- 260
            ..|.:|:|.   :....|:..|.|..|..:......|.:......:..|.:.:    |:.:.|. 
 Frog   182 AALVWLIDC---VKLCCVLRSENPVFEEPQMGEQSENGIDFNQLFLDYTVRCY----DQFMEGRD 239

  Fly   261 LFEE--ASKCIALWDQELTNEEAKLQAETRDQVISKKCDLPDRKALDQLIGDLKTKLQQLENKLH 323
            .|||  |..||.| .:....:|:.|:|                             |||...:| 
 Frog   240 TFEEYDADMCIRL-KEAYHVDESNLEA-----------------------------LQQESRRL- 273

  Fly   324 DPSEDNKLNKLERLTKEHDQLAQQLAASEEELIKKLKLYEQLSAQVEEKQSNLRQQMKYEKRLEQ 388
                   |.::|||.||.:....:||:     ::|||:  .|.|.:::.|:.|.:...:...|||
 Frog   274 -------LEEIERLEKEKENEPDRLAS-----MRKLKV--SLQADIQKYQNYLTEIESHSTLLEQ 324

  Fly   389 AVN---------RQKFSAQQLKELQMK-CDDMENYSKAYERQVK-EVSELELHQQVMLSRAKQKQ 442
            .|:         ..:..|.|.:.|::| ..|.:.||.|...::| |.:||   ||.:....|...
 Frog   325 RVSSVSEDLEATELESRAVQQENLRLKNILDNQKYSVADIERIKYEENEL---QQTIAKLTKDLD 386

  Fly   443 LDSVEVFNSHVRHLSMDPVICGLIKS--GIGQQSDLTLPLNPNQEDISERVQC-LELLGKLLQQH 504
            .|..::::..:::..|...:...:..  .||::..|..|..........::|| |:.....|..:
 Frog   387 EDKQQLWSEELKYAKMKESVETQLSEFHKIGRKVRLIPPTAEYANGYDFQIQCNLDSEQSSLIHY 451

  Fly   505 RQQ-NIDRRQMLDKQVAKVK---------SDSIE-LDTEIATMDSQLRAQKQRLTKMEASYRTKR 558
            |.: |:...::|.:...::.         .|.:| |:|.|....::::.||....|:|.:|:.| 
 Frog   452 RNKINVPLVEILSQSEGQIAGATNKKMGVEDMVEQLNTLIGEKKNEVKVQKDEAQKLEETYQQK- 515

  Fly   559 DMQAQHRQQLLEDQYDQTARLDELEKREKQALEKLEASKQRNEDLLTAAEQFQEQDLKARQDRLE 623
                                ::|.|:.||:.:.::|:.::..:.|.:...:..::.||    .|:
 Frog   516 --------------------VEEAEEDEKRWISEIESLEKHRQLLESGVNKSLDEALK----DLQ 556

  Fly   624 KCEQKLAKAEDQLLAVESKVNATQAKLNEVEQKVYSAKLPSFQPVLDAIKNH 675
            |.:|:|...|.|          |:.::.:||.|:..        |:.|:.||
 Frog   557 KEQQELQLVEHQ----------TEEEMRQVENKLVR--------VVHAVANH 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ndc80NP_572902.1 Ndc80_HEC 63..204 CDD:281754 34/186 (18%)
ndc80NP_001011162.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..79 14/82 (17%)
HEC1 46..612 CDD:227512 132/658 (20%)
Ndc80_HEC 50..205 CDD:367666 31/166 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 67 1.000 Inparanoid score I5173
OMA 1 1.010 - - QHG55244
OrthoDB 1 1.010 - - D364574at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR10643
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.080

Return to query results.
Submit another query.