DRSC/TRiP Functional Genomics Resources

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Protein Alignment Set2 and setd1bb

DIOPT Version :9

Sequence 1:NP_572888.2 Gene:Set2 / 32301 FlyBaseID:FBgn0030486 Length:2362 Species:Drosophila melanogaster
Sequence 2:XP_009302386.1 Gene:setd1bb / 571274 ZFINID:ZDB-GENE-080522-1 Length:1859 Species:Danio rerio


Alignment Length:1628 Identity:337/1628 - (20%)
Similarity:557/1628 - (34%) Gaps:453/1628 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 ASTSMSTATASAASASSAATVSRLF--SMFEMSHQSLPPPPPPPTALEIFAKPRPTQSLIVAQVT 174
            ||.:..|.|||...:.:...|::..  |..:.||..:|         ::.:.|..|:.:      
Zfish   491 ASENTLTQTASPVPSKTTYDVNQNHYPSQAQSSHSYVP---------KLCSSPETTEDI------ 540

  Fly   175 SEPSAVGGAHPVQTMAGLPPVTPRKRGRP-----RKSQLADAAIIPTVIVPSCSDSDTNSTSTTT 234
            |||          |:....|..|....:|     |...|..|.   :.::|..:...::|.||..
Zfish   541 SEP----------TVECPSPEFPAPESKPDSLDTRIQMLLSAG---SPVLPLLNQDSSDSESTEE 592

  Fly   235 SNMSSDSGELPGFPIQKPKSKLRVSLKRLKLGGRLESSDSGN--SPSSSSP--------EVEPPA 289
            ::....|...|. |.|.           |..|..|...|..:  ..:||.|        :|.|.|
Zfish   593 NDHHQRSSRAPS-PTQS-----------LTTGVSLNYDDISSVVRDTSSYPRENLSGMEDVNPTA 645

  Fly   290 LQDENAMD--ERPKQEQNLSRM-----VDAEENSDSDSQ-----IIFIEIETESPKGEEEQEEGR 342
            |.|. |.|  |.|..::.||:|     |:..|:.|:..|     :|.....|.:|...|......
Zfish   646 LYDV-AEDKHELPSPKKPLSKMPSSTIVNPNEDQDTSDQPSSIPVICTNRSTSTPPMSEIPPPPM 709

  Fly   343 P----------------VEVEPQDLIDIDMELAKQEPTPDPEEDLDEIMVEVLSGPPSLWSADDE 391
            |                ..:.|..:|   .::.::...|.....| .|...:..|..||    ..
Zfish   710 PSVHYPFLPGYSLPTSSCSLYPPSII---KQVCRRSNWPTSLAPL-PIPTRITQGQTSL----SP 766

  Fly   392 AEEEEDATVQRATPPGKEPAADSCSSAPRRSR-------------RSAPLSG-----SSRQGKTL 438
            :...:..:.....||...|   .|||...|.|             .|.|..|     .|....|:
Zfish   767 SFLPQSFSFMTHRPPYPSP---GCSSTMLRYRPPWPPPPPIPRFDPSVPPPGYVPIKESPHKATV 828

  Fly   439 EETFAEIAAESSKQILEAEESQDQEEQHILI---DLIEDTLSESEVTSSVS-PTIEHMVVEEV-- 497
            :...|.:|:|     |.|...:|...:.|.|   ...:....:.|..:.|| |.::.:..:::  
Zfish   829 DGVLAVVASE-----LRAIVKKDIHRRMIEIMAFKAFDQWWDDKEQAAKVSAPAVKSVGNKDIKL 888

  Fly   498 -VVEENQLVDEADE---ILDSKQEFVIKKVFSESDNIAASLNKDIFEPKVETKATCGE------- 551
             |:|::..:..|..   ||||.:   ||           ||:..|..|..:.|...|:       
Zfish   889 RVMEQSLRLGTAGGEGCILDSGK---IK-----------SLHGAIKLPSFKRKGPSGQGSTDVKR 939

  Fly   552 --VVPRPEMVTEDVYITEGIAATLEKSAVVTKPTTEMIAETKL---SDEVVIE----PPLKDESD 607
              ..|.||. :||           |:|...|.|  :.:.||.:   |::.:::    .||..:|:
Zfish   940 ICPSPGPEH-SED-----------EESEQQTAP--DCVDETTVLNASEDTMVKRRHSRPLALDSE 990

  Fly   608 PKQTEVELPESKPAVNIPKSERILSAE--------VETTSSPLVPPECCTLESVSGPVLLETSLS 664
            .:..|    |:......||.|::.:.:        .:.||.|.|             ::.:....
Zfish   991 EEDDE----ENSEKAEDPKPEQVHACDRVDIKKVTKDQTSDPCV-------------IVDDEDTD 1038

  Fly   665 TEEKSNENVETTPLKTEAAKED------SPPAAPEEEA-------SNSSEEPNFLLED---YESN 713
            ||..|:.|       :.|:|..      ||.:|....|       |..|..|.|:..|   .||:
Zfish  1039 TETLSHSN-------SSASKSQGYDSLASPRSASHYSACSPSVIDSPVSSRPVFVSSDDRSDESS 1096

  Fly   714 QEQVAEDEMMKCNNQKGQKQTPLPEMKEPEKPVAET--VSKKEKAMEN-PARSSPAIVDKKVRAG 775
            ....|||:     ...||..   ||....::.|.||  :|..|...|| ....:|..:.......
Zfish  1097 SVSSAEDD-----QSDGQSS---PETPREDRRVVETIWISSDEDDDENQETLHTPVFLPSPHSEE 1153

  Fly   776 EMEKKVVKSTKGTVPEKKMDSKKSCAAVTPAKQKESGKSAKEAILKKETE-KEKSSAKLDSSSPN 839
            :::..|..|...::   :.|.......:.||:.::..:.....:..:..: .|.....|.....:
Zfish  1154 DLQPPVTPSAPDSI---ESDVDNDFFDLDPAQMEDPEEELSVRVYMQGLKLPEPLRYTLQDPVKH 1215

  Fly   840 TLDKKGK---DTAQWSPQLQTLPKSSTKPPQESAPSVISKTTSNQPAPKEEQHAAKKGLSD---- 897
            .|..|.|   ....:|.|...||    .||..:...:.....:......|:|....:.|.|    
Zfish  1216 CLTNKLKLPDPVIFFSDQESELP----SPPSPTYRGLSDDLETQYTTDSEDQRVIMEALEDPVHL 1276

  Fly   898 ----------NSPPSVLKAKEKAVSGFVECDAMFKAMDLANA-----QLRLDEKNKKKLKKVPTK 947
                      :|.|.:...::.:.....|       :||.:.     :|..||.|          
Zfish  1277 RPITPTGFLSDSDPDIEMGRKFSPPAIEE-------VDLPHTPGRCLELEDDENN---------- 1324

  Fly   948 VEAPPKVEPPTAVPVPGQKKSLSGKTSLRRNTVYEDSPNLERNSSPSSDSAQANTSAGKL----- 1007
             ..||  .|||.:|.|   .|.:|...|..:.:|...|.|  :|.|..:  :...:.|::     
Zfish  1325 -ILPP--GPPTPLPPP---PSPTGIKELPSSPLYYGIPLL--SSYPGYE--EIPKTPGRVNDPGF 1379

  Fly  1008 -----------KPSK-VKKKINPRRSTICEAAKDLRSSSSSSTPTREVAASSPVSTSSDSSSK-- 1058
                       :||: ::...||..|:..:       |....||.|:::.|.||....:...:  
Zfish  1380 VFHSERITPPQEPSRTLESPCNPFLSSFAD-------SGIPRTPGRDMSLSPPVLNHRERHVQHR 1437

  Fly  1059 ---RNGSKRTTSDLDGGSKLDQRRYTICEDRQPETAIPVPLTKRRFSMHPKASANPLHDTLLQTA 1120
               :.|.:...||. ..|.:....:                           |.|..|.....||
Zfish  1438 ELLKYGQRHRNSDF-AQSDVQTNNF---------------------------SKNNSHTPRSDTA 1474

  Fly  1121 GKKRGRKEGKESLSRQNSLDSSSSASQGAPKKKALKSAEILSAALLETESSESTSSGSKMSRWDV 1185
            ..|| |:|..:...|...|..|...:.                  |.|.||...||.:       
Zfish  1475 RLKR-RRERLKKRQRMIELQRSRRCTD------------------LNTHSSLQVSSAT------- 1513

  Fly  1186 QTSPELEAANPFGDIAKFIEDGVNLLKRDKVDEDQRKEGQDEVKREADPEEDEFAQRVANMETPA 1250
             |.|..::..|.        |.|:.::.::.:..|    |.|.:|.:   |..:.:|.::: ||.
Zfish  1514 -TKPTNQSLEPL--------DRVSNIRTEESNNSQ----QIETQRLS---ESSYVRRDSSL-TPH 1561

  Fly  1251 TTPTPSPTQS-------------NPED----SASTTTVLKELETGGGVRRSHRIKQKPQGPRASQ 1298
            ...||...:.             |.|:    .||...::.|......:||:..|...|......:
Zfish  1562 LIFTPRSKRREKLVLHAVWTKGVNEEEIRHLKASYERLVVEDNEYDWLRRTRWIPHPPTSTSDDR 1626

  Fly  1299 GR----GV--------ASVALAPISMDEQLAELANIEAINEQFLR-SEGLNTFQLLKENFYRCAR 1350
            .|    ||        .|.....||..|:|..|.|...::|:|.. |:|.:....:..:      
Zfish  1627 PRRWLDGVRNHLTGCARSEGYYFISKREKLQYLCNERTVSEEFTADSQGKSVSAQVSHS------ 1685

  Fly  1351 QVSQENAEMQCDCFLTGDEEAQGHLSCGAGCINRMLMIECGPLCSNGARCTNKRFQQHQCWPCRV 1415
              |:..:|::.:         |..|.....|.:.:|..       |..:...||.        |.
Zfish  1686 --SRSGSELRAE---------QRRLLSSFSCDSDLLKF-------NQLKFRKKRL--------RF 1724

  Fly  1416 FRTEKKGCGITAELLIPPGEFIMEYVGEVIDSEEFERRQHLYSKDRNRHYYFMALRGEAVIDATS 1480
            .::.....|:.||..|...|.|:||||:.|.....:.|:..|..:.....|...:..:.:||||.
Zfish  1725 GKSRIHDWGLFAEEPIAADEMIIEYVGQSIRQVIADMRERRYETEGIGSSYLFRVDHDTIIDATK 1789

  Fly  1481 KGNISRYINHSCDPNAETQKWTVNGELRIGFFSVKPIQPGEEITFDYQYLRYGRDAQRCYCEAAN 1545
            .||::|:|||||:||...:..||..:.:|..:|.:||...||||:||:: ....:...|.|.|.|
Zfish  1790 CGNLARFINHSCNPNCYAKVITVEAQKKIVIYSRQPITVNEEITYDYKF-PIEDEKIPCLCAAEN 1853

  Fly  1546 CRG 1548
            |||
Zfish  1854 CRG 1856

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Set2NP_572888.2 AWS 1358..1410 CDD:197795 8/51 (16%)
SET 1414..1533 CDD:214614 41/118 (35%)
PostSET 1535..1551 CDD:214703 7/14 (50%)
WW 2014..2043 CDD:278809
SRI 2270..2348 CDD:285448
setd1bbXP_009302386.1 RRM_SF 104..195 CDD:302621
RRM <111..>181 CDD:223796
N-SET 1574..1710 CDD:288597 28/152 (18%)
SET <1637..1859 CDD:225491 68/253 (27%)
SET 1720..1843 CDD:214614 43/131 (33%)
PostSET 1843..1859 CDD:214703 7/14 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593900
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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