DRSC/TRiP Functional Genomics Resources

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Protein Alignment Set2 and phf3

DIOPT Version :9

Sequence 1:NP_572888.2 Gene:Set2 / 32301 FlyBaseID:FBgn0030486 Length:2362 Species:Drosophila melanogaster
Sequence 2:XP_005157087.1 Gene:phf3 / 553518 ZFINID:ZDB-GENE-090313-207 Length:1691 Species:Danio rerio


Alignment Length:1373 Identity:303/1373 - (22%)
Similarity:481/1373 - (35%) Gaps:439/1373 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PSNPSPVASRGRGRGRPP-------KVALSALGNTPPHINPSLKHADAEASPTAP--------ED 56
            |.|.:..|:      ||.       |.:|||..|.|             :|||.|        ..
Zfish   309 PGNKNGTAA------RPAVKKLLKNKQSLSAAKNKP-------------SSPTKPGLLQKESKHP 354

  Fly    57 QD----SGQSECRRSSRKKI-IKFDVRDLLNKN-RKAHKIQIEARIDSNPSTGHSQSGTTAASTS 115
            ||    :||.|..:....|: :|.....|..|: .|..|||          .|||.|.|.:.|..
Zfish   355 QDKKIHTGQPEVHKGKPIKVGLKRPGAALGPKDGSKIQKIQ----------DGHSASKTASPSGP 409

  Fly   116 MS---TATASAASASSAATVSRLFSMFEMSHQSLPPPPPPPTALEIFAKPRPTQSLIVAQVTS-E 176
            :|   |..:|:.|...:.|.||     :.|..|:|..|.        ...:|:.|:.::...| :
Zfish   410 LSPTITKKSSSESGPLSPTNSR-----KPSSDSVPLSPT--------NSRKPSNSVPLSSTNSRK 461

  Fly   177 PSAVGGAHPVQTMAGLPPVTPRKRGRPRKSQLADAAIIPTVIVPSCSDSDTNSTSTTTSNMSSDS 241
            ||           :...|::|....:|..:           :||.   |.|||     ..:||||
Zfish   462 PS-----------SNSVPLSPSNSRKPSSN-----------LVPL---SPTNS-----RKLSSDS 496

  Fly   242 GELPGFPIQKPKSKLRVSLKRLKLGGRLESSDSG---------------NSPSSSSPEVEPPALQ 291
            |.|.....:||.|.   |:.......|..||:||               .:|.:|..:..||...
Zfish   497 GPLSPTNSRKPSSD---SVPLSPTNSRRPSSESGPGVKSVQSPHPPKKPQNPPTSGNKTNPPVAN 558

  Fly   292 DENAMDERPKQEQNLSRMVD--AEENSDSDSQIIFIE-----IETESPKGEEEQEEGRPVEVE-- 347
            .:.  ||  :|::..::.::  .:.:...:|:.|.||     |...:|..::|.|.....|.|  
Zfish   559 SQG--DE--EQDKVKAKKIEKTQQRHKSRNSRSISIEEPQLFIPDNAPVVKKEAEGDALAESETV 619

  Fly   348 ------------PQ-----------------DLIDIDMELAKQEPTPDPEEDLDEIMVEVLSGPP 383
                        |.                 |.:.:|:...:|.    .:||.:.:.::..:   
Zfish   620 WDPTKNCVLCKKPHNNRFMVGCGRCDDWFHGDCVGLDLAKVQQM----EKEDQEYVCLKCCA--- 677

  Fly   384 SLWSADDEAEEEEDATVQRATPPGKEPAADSCSSAPRRSRRSA----PLSGSSRQGKTLEETFAE 444
               ..|::.:..|.:..:.|....:.|.....:...|..|:.|    |...|:::|..::.    
Zfish   678 ---QEDEKTQASELSDDKSAAKQKQRPQQSLTAGGIRPFRKDAGERRPSEDSAQKGPNVKH---- 735

  Fly   445 IAAESSKQILEAEESQDQEEQHI---LIDLIEDTL----SESEV-TSSVSPTIEHMVVEEVVVEE 501
               |:.|..:....|:.....||   :.|.:|:.|    .||:: .||..|.       ||....
Zfish   736 ---ETKKVKISPVSSKKPSTGHIRRSVRDSLEEILLKRSKESDLKISSDRPA-------EVARRT 790

  Fly   502 NQLVDEADEILDSKQEFVIKKVFSESDNIAASLNKDIFEPKVETKATCGEVVPRP--EMVTEDVY 564
            .:.:....:.:|||.:   .|..|.:.|:..:.|..:|:     :...|||.|..  .|..|::.
Zfish   791 EKELFALFQGVDSKYK---NKYRSLTFNLKDAKNNVLFK-----RVLKGEVSPADLVRMTAEELA 847

  Fly   565 ITEGIAATLEKSAVVTKPTTEMIAE----------TKLS--DEVVIE--PPLKD------ESDPK 609
            ..| :||..::.   .:.|.|||.:          ||::  .|:.||  .|.|.      |.:|.
Zfish   848 SKE-LAAWRKRE---NRHTIEMIEKEQREVERRPITKITHKGEIEIENQEPAKAPEAIEVEPEPV 908

  Fly   610 QTEVELPESKP---AVNIPKSERILSAEVETTS---SPLVPPEC--CT-------------LESV 653
            ...||:||.||   .|..||.      .::||:   |.|....|  ||             :..|
Zfish   909 LKVVEVPEEKPPEIKVESPKK------SIDTTNLHKSHLFDLNCKICTGRMAPPTEEASTKVVKV 967

  Fly   654 SGPVLLETSLSTEEKSNENVETTPLKTEAAKEDSPPAAPEEEASNSSEEPNFLLEDYESNQEQVA 718
            :..|:...|.:|||  ::...|||  |.|..:|....|.||...      |||.|...::.....
Zfish   968 ATTVVRRQSSATEE--SQPSTTTP--TSALMDDLTLRAMEEGLL------NFLPESSRADSLCSK 1022

  Fly   719 EDEMMKCNNQK----GQKQTPLPEMKEPEKPVAETVSKK-----------EKAMEN---PARSSP 765
            ||.....::.:    |....|         .||..::|.           :...:|   ..|.||
Zfish  1023 EDTATFLSSLESLWGGYVDMP---------AVARFLTKSYLVSGTLDHLTQDLPDNIQVGGRISP 1078

  Fly   766 AIV---DKKVRA-GEMEKKVVKSTKGTVPEK--------KMDSKKSCAAVTPAKQKESGKSAKEA 818
            .||   .:|:|| |..|..|::.:..|..::        ...|::....|.     .:.|..|:.
Zfish  1079 QIVWDYVEKIRASGTKEICVIRFSPDTEEDEISYTLLYAYFSSRRRYGVVA-----NNRKQVKDM 1138

  Fly   819 ILKKETEKEK--------SSAKLDSSSPNTL------DKKGKDTAQWSPQLQTLPKSSTKPPQ-- 867
            .|......||        ....|:::.||.|      .:..:|..      ..||...::.|.  
Zfish  1139 YLIPLGSTEKIPHQIVPFDGPGLETNRPNLLLGLIIRQRPKRDFG------VILPSDVSEAPSFL 1197

  Fly   868 -ESAPSV--ISKT----TSNQPAPKEEQHAAKKGLSD------NSP---------------PSVL 904
             ||.|.|  ..||    .:.|....:..:|.||..:|      ..|               |.||
Zfish  1198 AESKPQVDYPQKTPVALDTEQSFISDLGNARKKDTTDLIKSVVEEPILDTETDENVSLRFLPGVL 1262

  Fly   905 KAKEKAV--------SGFVECDAMFKAMDLAN----------AQLRLDE--KNKKKLKKVPTKVE 949
            |..|||.        |...:.:|...::|..|          :..|||.  ..||:.|.|.|: :
Zfish  1263 KLPEKAASCSNDNMKSDSTKTEAKTPSVDSGNNATVSPKPIASAPRLDRFVIKKKEPKAVKTE-Q 1326

  Fly   950 APPKVEPPTAVPVPGQKK------SLSGK----------TSLRRNTVYEDSPNLERNSSPSSDSA 998
            ||..|    ::.:..:||      |||.|          :||......|:|.:.. .:||:|...
Zfish  1327 APVSV----SLEISSEKKETAVVLSLSDKPADVSTESFLSSLTNTKPKEESESCS-TASPTSQET 1386

  Fly   999 QANTSAGKLKPSKVKKKINPRRSTICEAAKDLRSSSSSSTPTREVAASSPVSTSSDSSS---KRN 1060
            ...||:|                    .:||.....|||.|..| ..|||.:|:..|.:   ||.
Zfish  1387 SQTTSSG--------------------TSKDSVDEGSSSAPKNE-TISSPTATTKVSPAGILKRA 1430

  Fly  1061 GSKRTTSDLDGGSKLDQRRYTICEDRQPETAI-PVPLTKRRFSMHPKASANPLHDTLLQTAGKKR 1124
            .|....::    |||.:     ....:||..: |.|.|:     ..||..:....|.:.:.||..
Zfish  1431 SSAPEPTE----SKLPE-----SSSEKPEQKVTPQPSTQ-----ECKAIEDIQAITTISSIGKNE 1481

  Fly  1125 GRKEGKES 1132
            |.|:.:.|
Zfish  1482 GLKQSRSS 1489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Set2NP_572888.2 AWS 1358..1410 CDD:197795
SET 1414..1533 CDD:214614
PostSET 1535..1551 CDD:214703
WW 2014..2043 CDD:278809
SRI 2270..2348 CDD:285448
phf3XP_005157087.1 DUF4045 <341..732 CDD:330572 95/460 (21%)
PHD_PHF3 625..675 CDD:277108 6/53 (11%)
TFIIS_M 755..863 CDD:311443 28/126 (22%)
SPOC 1027..1176 CDD:311609 29/162 (18%)
Endomucin 1271..>1449 CDD:330316 49/213 (23%)
RRM 1605..>1690 CDD:330708
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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