DRSC/TRiP Functional Genomics Resources

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Protein Alignment Set2 and egg

DIOPT Version :10

Sequence 1:NP_572888.2 Gene:Set2 / 32301 FlyBaseID:FBgn0030486 Length:2362 Species:Drosophila melanogaster
Sequence 2:NP_611966.3 Gene:egg / 37962 FlyBaseID:FBgn0086908 Length:1262 Species:Drosophila melanogaster


Alignment Length:1531 Identity:283/1531 - (18%)
Similarity:492/1531 - (32%) Gaps:535/1531 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 LESS-----DSGNSPSSSSPEVEPPALQDENAMDERPKQEQNLSRMVDAEENSDSDSQIIFIEIE 328
            ||||     |...:|:|.......|..:.||:::...:|   .::.|:.||.:.|::........
  Fly    11 LESSGSTVEDVQETPASREKSYGLPVRKGENSLESPAEQ---AAKDVEIEELTHSEAIAATGSTR 72

  Fly   329 TESPKGEEEQEEGRPVEVEPQDLIDIDMELAKQEPTPDPEEDLDEIMVEVLSGPPSLWSADDEAE 393
            .:.|.|.:..:       ||..|.| :.|..|.|.|            :.::..|.|.:.|    
  Fly    73 KQCPYGGKAPD-------EPGKLAD-ESEDRKGENT------------KAIASSPVLVAVD---- 113

  Fly   394 EEEDATVQRATPPGKEPAADSCSSAPRRSRRSAPLSGSSRQGKTLEE-TFAEIAAESSKQILEAE 457
              .|::|:....|.|..:|:.....|.:     |.:.:....|..|| |.:.|::.:|:...|.:
  Fly   114 --SDSSVELIESPVKFSSANESEKDPPK-----PDAVNEAAAKEAEEMTDSSISSPTSESFPEKD 171

  Fly   458 E----SQDQEEQHILIDL-IEDTLSESEVTSSVSPTIE-HMVVEEVVVEENQLVDEADEILDSKQ 516
            |    ..:||...:.:|. :|:::|.......:..|:: |..:....:||:::||:.|::|:.:.
  Fly   172 EKTNKENEQEPPGMEVDQDVEESISRPAEEYKIENTLKGHKRISLTEIEEHKIVDKKDDVLEVEL 236

  Fly   517 EFVIKKVFSESDNIAASLNK-DIFEPKVETKATCGEVVPRPEMVTEDVYITEGIAATLEKSAVVT 580
            |.......:|.:.:.|.|:. |:|..|......|.::        ...|:...: |||....|:.
  Fly   237 EKGTAPKAAEDEKLNALLSDGDVFYDKECVNCNCTKL--------HKQYVLANM-ATLNFYQVLR 292

  Fly   581 KPT-----------TEMIAETKLSDEVVIEPP--LKD-----------ESDPKQTEVELPESKPA 621
            |.:           |.|....:.:.:::.:.|  |||           :|..::.|.:.||..  
  Fly   293 KSSKQQFLCMGCHDTAMDLYEEYAGQLMAKQPLLLKDFHQDHADFVALDSSDEEEEEKQPEKS-- 355

  Fly   622 VNIPKSE-RILSAEVETTSSPLVPPECCTLE-SVSGPVL------LETSLSTEEKSNENVETTPL 678
             :..|:: :::..|::.....::.....|.: |.|..:|      ||...:..:...|.|:||..
  Fly   356 -DFSKNKLQLIEDELDDAIKNVLNKVDFTAQLSWSKTILQAKADHLERQFALADVELEKVQTTAD 419

  Fly   679 KTEAAKEDSPPAAPEEEASNSSEEPNFLLEDYESNQEQVAEDEMMKCNNQKGQKQTPLP-EMKEP 742
            |...|..:|.|.|.:...:...|..:::.|                         .|.| |:..|
  Fly   420 KMHCALYNSCPVAHKHLPTLDIEPSDYVHE-------------------------VPPPGEIVRP 459

  Fly   743 EKPVAET-VSKKEKAMENPARSSPAIVDKKVRAGEMEKKVVKSTKGT-VPEKKMDSKKSCAAVTP 805
            ...:.|| .:.|.||:                |..:..||::.|:.| :....|.|.|.....||
  Fly   460 PIQLGETYYAVKNKAI----------------ASWVSIKVIEFTESTAINGNTMKSYKIRYLNTP 508

  Fly   806 AKQKESGKSAKEAILKKETEKEKSSAKLDSSSPNTLDKKGKDTAQWSPQLQTLPKSSTKPPQESA 870
            .:..::..:...|..:....:.....::.:....|...:|||                |...:||
  Fly   509 YQMIKTVTAKHIAYFEPPPVRLTIGTRVIAYFDGTTLSRGKD----------------KGVVQSA 557

  Fly   871 --PSVISKTTSNQPAPKEEQHAAKKGLSDNSPPSVLKAKEKAVSGFVECDAMFKAMDLANAQLRL 933
              |.:|:     :|..:..::.......|.....|.....:.|     |.|..|..:..:|..| 
  Fly   558 FYPGIIA-----EPLKQANRYRYLIFYDDGYTQYVPHRDVRLV-----CQASEKVWEDVHAASR- 611

  Fly   934 DEKNKKKLKKVPTKVEAPPKVEPPTAVPVPGQKKSLSG--------------------------- 971
             :..:|.::|.        .|:.|......||..:...                           
  Fly   612 -DFIQKYVEKY--------SVDRPMVQCTRGQSMTTESNGTWLYARVIDIDCSLVLMQFEGDKNH 667

  Fly   972 -----KTSLRRNTVYEDSPNLERNSSPSSDSAQANTSAGKLKP-----------SKVKKKIN--P 1018
                 :.|||...|:.::.|     :.:|.|||......:.:|           |||.:::.  .
  Fly   668 TEWIYRGSLRLGPVFRETQN-----NMNSSSAQQLRVPRRTEPFIRYTKEMESSSKVNQQMRAFA 727

  Fly  1019 RRSTICEAAKDLRSSSSSSTPTREVAASSPVSTSSDSSSKR--NGSKRTTSD----------LDG 1071
            |:|:.......|.::||::||......:..||||:.:|:.|  |.|.....|          ...
  Fly   728 RKSSASAQNNALAAASSAATPAGGRTNAGGVSTSNSASAVRHLNNSTIYVDDENRPKGHVVYFTA 792

  Fly  1072 GSKLDQRRYTICEDRQPETAIPVPLTKRRFSMHPKASANPLHDTLLQTAGKKRGRKEGKESL-SR 1135
            ...|..:.|. |.:..|.....:        :|...|.:||...||          .|.|.| .|
  Fly   793 KRNLPPKMYK-CHECSPNCLFKI--------VHRLDSYSPLAKPLL----------SGWERLVMR 838

  Fly  1136 QNSLDSSSSASQGAPKKKALKSAEILSAALLETESSESTSSGSKMSRWDVQTSPELEAANPFGDI 1200
            |.   :..|.....|..|:|:|...:...|..||:..:..        :...:|:|:.      :
  Fly   839 QK---TKKSVVYKGPCGKSLRSLAEVHRYLRATENVLNVD--------NFDFTPDLKC------L 886

  Fly  1201 AKFIEDGVNLLKRDKVDEDQRKEGQDEVKREADPEEDEFAQRVANMETPA------TTPTPS--- 1256
            |::..| .:::|...:.:.|.|                       |..|.      |.|.|.   
  Fly   887 AEYSID-PSIVKDTDISKGQEK-----------------------MAIPLVNYYDNTLPPPCTYA 927

  Fly  1257 ----PTQS-------------NPEDSASTTTVLKELE-TGGGVRRSHRIKQKPQGPRASQGRGVA 1303
                ||:.             :.||..|..:.....: |..|||..:     |:.|         
  Fly   928 KQRIPTEGVHLNLDEEFLLCCDCEDDCSDKSKCACWQLTVAGVRYCN-----PKKP--------- 978

  Fly  1304 SVALAPISMDEQLAELANIEAINEQFLRSEGLNTFQLLKENFYRCARQVSQENAEMQCDCFLTGD 1368
                              ||.|..|:.|         |.|:                   ..||.
  Fly   979 ------------------IEEIGYQYKR---------LHEH-------------------VPTGI 997

  Fly  1369 EEAQGHLSCGAGCINRMLMIECGPLCSNGARCTNKRFQQHQCWPCRVFRTEKKGCGITAELLIPP 1433
            .|......|...|:||::...           ...:.|        ||:|..:|.|:.....||.
  Fly   998 YECNSRCKCKKNCLNRVVQFS-----------LEMKLQ--------VFKTSNRGWGLRCVNDIPK 1043

  Fly  1434 GEFIMEYVGEVI----------------------------------------------------- 1445
            |.||..|.|.::                                                     
  Fly  1044 GAFICIYAGHLLTETMANEGGQDAGDEYFADLDYIEVAEQLKEGYESEVDHSDPDAEEDNGGPDA 1108

  Fly  1446 -DSEEFERRQH---------------------------------------------------LYS 1458
             |.::|....|                                                   |:.
  Fly  1109 EDDDDFRPNYHYQRKIKRSSRSGSTQNSSTQSSELDSQERAVINFNPNADLDETVRENSVRRLFG 1173

  Fly  1459 KDRNRHYYFMALRGEAVIDATSKGNISRYINHSCDPNAETQKWTVN-GELR---IGFFSVKPIQP 1519
            ||...:          ::||.:.||:.||.||||.||...|...|: .:||   :.|||...|:.
  Fly  1174 KDEAPY----------IMDAKTTGNLGRYFNHSCSPNLFVQNVFVDTHDLRFPWVAFFSAAHIRS 1228

  Fly  1520 GEEITFDYQY--------LRYGRDAQRCYCEAANCR 1547
            |.|:|::|.|        :.|      |.|.|.|||
  Fly  1229 GTELTWNYNYEVGVVPGKVLY------CQCGAPNCR 1258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Set2NP_572888.2 valS <709..832 CDD:237855 20/125 (16%)
AWS 1358..1410 CDD:197795 8/51 (16%)
SET_SETD2 1410..1551 CDD:380949 50/255 (20%)
WW 2014..2043 CDD:459800
SRI 2266..2355 CDD:462404
eggNP_611966.3 Tudor_SETDB1_rpt1 532..622 CDD:410453 20/125 (16%)
Tudor_SETDB1_rpt2 630..684 CDD:410548 6/53 (11%)
HMT_MBD 823..879 CDD:238689 17/76 (22%)
SET_SETDB1 900..1262 CDD:380915 83/477 (17%)
Blue background indicates that the domain is not in the aligned region.

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